Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
LDLRP01130 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
LDLRP01130 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
LDLRP01130 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC14.62□□□□□ -0.07
LDLRP01130 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
LDLRP01130 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LDLRP01130 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC14.61□□□□□ -0.07
LDLRP01130 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
LDLRP01130 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC14.61□□□□□ -0.07
LDLRP01130 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC14.61□□□□□ -0.07
LDLRP01130 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LDLRP01130 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
LDLRP01130 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LDLRP01130 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
LDLRP01130 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LDLRP01130 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
LDLRP01130 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
LDLRP01130 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
LDLRP01130 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC14.61□□□□□ -0.07
LDLRP01130 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LDLRP01130 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LDLRP01130 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LDLRP01130 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
LDLRP01130 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC14.61□□□□□ -0.07
LDLRP01130 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC14.61□□□□□ -0.07
LDLRP01130 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
LDLRP01130 GALT-202ENST00000450095 1280 ntTSL 2 BASIC14.61□□□□□ -0.07
LDLRP01130 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC14.61□□□□□ -0.07
LDLRP01130 PFAS-212ENST00000625942 396 ntTSL 5 BASIC14.61□□□□□ -0.07
LDLRP01130 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC14.61□□□□□ -0.07
LDLRP01130 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC14.61□□□□□ -0.07
LDLRP01130 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
LDLRP01130 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
LDLRP01130 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC14.61□□□□□ -0.07
LDLRP01130 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
LDLRP01130 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
LDLRP01130 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LDLRP01130 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LDLRP01130 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LDLRP01130 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
LDLRP01130 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
LDLRP01130 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LDLRP01130 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
LDLRP01130 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
LDLRP01130 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
LDLRP01130 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LDLRP01130 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LDLRP01130 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
LDLRP01130 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC14.61□□□□□ -0.07
LDLRP01130 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
LDLRP01130 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LDLRP01130 AC113367.3-201ENST00000508316 1912 ntBASIC14.6□□□□□ -0.07
LDLRP01130 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC14.6□□□□□ -0.07
LDLRP01130 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
LDLRP01130 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LDLRP01130 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
LDLRP01130 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LDLRP01130 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LDLRP01130 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
LDLRP01130 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
LDLRP01130 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LDLRP01130 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
LDLRP01130 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC14.6□□□□□ -0.07
LDLRP01130 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LDLRP01130 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
LDLRP01130 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC14.6□□□□□ -0.07
LDLRP01130 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LDLRP01130 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LDLRP01130 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
LDLRP01130 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
LDLRP01130 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LDLRP01130 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LDLRP01130 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
LDLRP01130 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC14.6□□□□□ -0.07
LDLRP01130 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
LDLRP01130 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
LDLRP01130 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
LDLRP01130 HIST1H2BPS3-201ENST00000419683 341 ntBASIC14.6□□□□□ -0.07
LDLRP01130 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC14.6□□□□□ -0.07
LDLRP01130 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC14.6□□□□□ -0.07
LDLRP01130 AC098859.1-201ENST00000502915 1238 ntBASIC14.6□□□□□ -0.07
LDLRP01130 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC14.6□□□□□ -0.07
LDLRP01130 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
LDLRP01130 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC14.6□□□□□ -0.07
LDLRP01130 ORC6-206ENST00000568364 888 ntTSL 5 BASIC14.6□□□□□ -0.07
LDLRP01130 MIR6775-201ENST00000617557 69 ntBASIC14.6□□□□□ -0.07
LDLRP01130 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
LDLRP01130 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
LDLRP01130 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC14.6□□□□□ -0.07
LDLRP01130 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
LDLRP01130 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC14.6□□□□□ -0.07
LDLRP01130 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
LDLRP01130 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
LDLRP01130 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LDLRP01130 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
LDLRP01130 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LDLRP01130 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
LDLRP01130 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
LDLRP01130 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
LDLRP01130 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms