Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC12.65□□□□□ -0.38
ABCA1O95477 FTLP10-202ENST00000505798 471 ntBASIC12.65□□□□□ -0.38
ABCA1O95477 AC100850.1-201ENST00000506768 649 ntBASIC12.65□□□□□ -0.38
ABCA1O95477 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
ABCA1O95477 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC12.65□□□□□ -0.38
ABCA1O95477 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC12.65□□□□□ -0.38
ABCA1O95477 RN7SL774P-201ENST00000577467 290 ntBASIC12.65□□□□□ -0.38
ABCA1O95477 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
ABCA1O95477 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC12.65□□□□□ -0.38
ABCA1O95477 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
ABCA1O95477 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
ABCA1O95477 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC12.65□□□□□ -0.38
ABCA1O95477 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
ABCA1O95477 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC12.65□□□□□ -0.38
ABCA1O95477 HLA-DQB2-231ENST00000435145 2026 ntBASIC12.65□□□□□ -0.38
ABCA1O95477 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC12.65□□□□□ -0.38
ABCA1O95477 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
ABCA1O95477 AC068587.6-202ENST00000641839 5619 ntBASIC12.65□□□□□ -0.39
ABCA1O95477 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
ABCA1O95477 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.39
ABCA1O95477 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.39
ABCA1O95477 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
ABCA1O95477 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.39
ABCA1O95477 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA1O95477 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA1O95477 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA1O95477 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA1O95477 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA1O95477 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA1O95477 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC12.64□□□□□ -0.39
ABCA1O95477 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA1O95477 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC12.64□□□□□ -0.39
ABCA1O95477 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC12.64□□□□□ -0.39
ABCA1O95477 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA1O95477 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA1O95477 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC12.64□□□□□ -0.39
ABCA1O95477 RNF41-210ENST00000552244 716 ntTSL 3 BASIC12.64□□□□□ -0.39
ABCA1O95477 RN7SL48P-201ENST00000579283 293 ntBASIC12.64□□□□□ -0.39
ABCA1O95477 RN7SL713P-201ENST00000582127 302 ntBASIC12.64□□□□□ -0.39
ABCA1O95477 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC12.64□□□□□ -0.39
ABCA1O95477 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC12.64□□□□□ -0.39
ABCA1O95477 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC12.64□□□□□ -0.39
ABCA1O95477 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC12.64□□□□□ -0.39
ABCA1O95477 AC091544.8-201ENST00000619490 361 ntBASIC12.64□□□□□ -0.39
ABCA1O95477 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC12.64□□□□□ -0.39
ABCA1O95477 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA1O95477 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA1O95477 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA1O95477 RPS6KC1-206ENST00000543354 4082 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA1O95477 FEM1A-201ENST00000269856 9593 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
ABCA1O95477 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA1O95477 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA1O95477 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA1O95477 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA1O95477 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA1O95477 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC12.64□□□□□ -0.39
ABCA1O95477 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA1O95477 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC12.64□□□□□ -0.39
ABCA1O95477 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
ABCA1O95477 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA1O95477 AC013268.4-201ENST00000637413 2228 ntBASIC12.64□□□□□ -0.39
ABCA1O95477 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC12.64□□□□□ -0.39
ABCA1O95477 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC12.64□□□□□ -0.39
ABCA1O95477 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA1O95477 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA1O95477 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA1O95477 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA1O95477 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC12.64□□□□□ -0.39
ABCA1O95477 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
ABCA1O95477 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
ABCA1O95477 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA1O95477 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC12.64□□□□□ -0.39
ABCA1O95477 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
ABCA1O95477 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA1O95477 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC12.64□□□□□ -0.39
ABCA1O95477 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC12.64□□□□□ -0.39
ABCA1O95477 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC12.64□□□□□ -0.39
ABCA1O95477 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
ABCA1O95477 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA1O95477 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC12.64□□□□□ -0.39
ABCA1O95477 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA1O95477 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA1O95477 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA1O95477 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC12.64□□□□□ -0.39
ABCA1O95477 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA1O95477 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA1O95477 AL139094.1-201ENST00000405549 1188 ntBASIC12.64□□□□□ -0.39
ABCA1O95477 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC12.64□□□□□ -0.39
ABCA1O95477 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA1O95477 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA1O95477 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC12.64□□□□□ -0.39
ABCA1O95477 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA1O95477 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC12.64□□□□□ -0.39
ABCA1O95477 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA1O95477 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA1O95477 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA1O95477 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC12.64□□□□□ -0.39
ABCA1O95477 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA1O95477 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA1O95477 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms