Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
NPHP1O15259 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
NPHP1O15259 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
NPHP1O15259 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
NPHP1O15259 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
NPHP1O15259 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC18.91■□□□□ 0.62
NPHP1O15259 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC18.91■□□□□ 0.62
NPHP1O15259 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC18.91■□□□□ 0.62
NPHP1O15259 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
NPHP1O15259 AC026434.2-201ENST00000506094 1078 ntBASIC18.91■□□□□ 0.62
NPHP1O15259 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
NPHP1O15259 IGLV3-15-201ENST00000518356 244 ntBASIC18.91■□□□□ 0.62
NPHP1O15259 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
NPHP1O15259 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
NPHP1O15259 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC18.91■□□□□ 0.62
NPHP1O15259 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
NPHP1O15259 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
NPHP1O15259 AC090164.2-201ENST00000611487 516 ntBASIC18.91■□□□□ 0.62
NPHP1O15259 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
NPHP1O15259 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
NPHP1O15259 AL157414.3-201ENST00000624276 1954 ntBASIC18.91■□□□□ 0.62
NPHP1O15259 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC18.91■□□□□ 0.62
NPHP1O15259 AC006480.2-201ENST00000609770 1337 ntBASIC18.91■□□□□ 0.62
NPHP1O15259 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
NPHP1O15259 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
NPHP1O15259 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
NPHP1O15259 AC006449.5-201ENST00000610658 2098 ntBASIC18.91■□□□□ 0.62
NPHP1O15259 SUPT20HL2-201ENST00000486479 2409 ntBASIC18.91■□□□□ 0.62
NPHP1O15259 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
NPHP1O15259 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
NPHP1O15259 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC18.91■□□□□ 0.62
NPHP1O15259 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
NPHP1O15259 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
NPHP1O15259 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
NPHP1O15259 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC18.9■□□□□ 0.62
NPHP1O15259 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
NPHP1O15259 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
NPHP1O15259 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC18.9■□□□□ 0.62
NPHP1O15259 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
NPHP1O15259 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC18.9■□□□□ 0.62
NPHP1O15259 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
NPHP1O15259 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
NPHP1O15259 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
NPHP1O15259 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
NPHP1O15259 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
NPHP1O15259 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
NPHP1O15259 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
NPHP1O15259 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
NPHP1O15259 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
NPHP1O15259 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
NPHP1O15259 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
NPHP1O15259 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
NPHP1O15259 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC18.9■□□□□ 0.62
NPHP1O15259 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC18.9■□□□□ 0.62
NPHP1O15259 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC18.9■□□□□ 0.62
NPHP1O15259 HLA-K-203ENST00000430151 1046 ntBASIC18.9■□□□□ 0.62
NPHP1O15259 AC006335.1-201ENST00000445200 547 ntBASIC18.9■□□□□ 0.62
NPHP1O15259 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC18.9■□□□□ 0.62
NPHP1O15259 CSH2-206ENST00000560142 749 ntTSL 5 BASIC18.9■□□□□ 0.62
NPHP1O15259 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC18.9■□□□□ 0.62
NPHP1O15259 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC18.9■□□□□ 0.62
NPHP1O15259 NAP1L6-202ENST00000641404 1222 ntBASIC18.9■□□□□ 0.62
NPHP1O15259 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC18.9■□□□□ 0.62
NPHP1O15259 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC18.9■□□□□ 0.62
NPHP1O15259 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
NPHP1O15259 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
NPHP1O15259 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
NPHP1O15259 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
NPHP1O15259 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
NPHP1O15259 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
NPHP1O15259 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
NPHP1O15259 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
NPHP1O15259 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC18.9■□□□□ 0.62
NPHP1O15259 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
NPHP1O15259 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
NPHP1O15259 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
NPHP1O15259 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
NPHP1O15259 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC18.89■□□□□ 0.62
NPHP1O15259 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
NPHP1O15259 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC18.89■□□□□ 0.62
NPHP1O15259 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
NPHP1O15259 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
NPHP1O15259 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
NPHP1O15259 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
NPHP1O15259 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
NPHP1O15259 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
NPHP1O15259 IGF1-203ENST00000392904 761 ntTSL 5 BASIC18.89■□□□□ 0.61
NPHP1O15259 CMC1-204ENST00000423894 549 ntTSL 2 BASIC18.89■□□□□ 0.61
NPHP1O15259 AC234782.1-201ENST00000451950 919 ntBASIC18.89■□□□□ 0.61
NPHP1O15259 AC008267.1-201ENST00000474858 1069 ntBASIC18.89■□□□□ 0.61
NPHP1O15259 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC18.89■□□□□ 0.61
NPHP1O15259 AC125604.1-201ENST00000496255 707 ntBASIC18.89■□□□□ 0.61
NPHP1O15259 CDC23-208ENST00000505120 455 ntTSL 3 BASIC18.89■□□□□ 0.61
NPHP1O15259 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC18.89■□□□□ 0.61
NPHP1O15259 HNRNPA1P36-201ENST00000521313 955 ntBASIC18.89■□□□□ 0.61
NPHP1O15259 FADS2-212ENST00000522639 360 ntTSL 5 BASIC18.89■□□□□ 0.61
NPHP1O15259 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
NPHP1O15259 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
NPHP1O15259 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
NPHP1O15259 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC18.89■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms