Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 LSM5-207ENST00000410044 687 ntTSL 3 BASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 HNRNPA1P40-201ENST00000426371 1278 ntBASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 DFFBP1-201ENST00000433250 979 ntBASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 SPTLC1P1-201ENST00000447199 261 ntBASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 CYMP-203ENST00000474680 1263 ntBASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 SPDYE22P-201ENST00000582158 798 ntBASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 AL603764.1-201ENST00000636452 321 ntBASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 AL356275.1-201ENST00000638446 7440 ntTSL 5 BASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 AGER-206ENST00000375070 1463 ntTSL 5 BASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 FES-203ENST00000394302 2133 ntTSL 5 BASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 AC097359.2-201ENST00000604992 2389 ntBASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 USP28-214ENST00000545540 3431 ntTSL 2 BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 AC015802.1-201ENST00000588104 1449 ntBASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 AC114812.1-204ENST00000449669 728 ntBASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 INGX-202ENST00000489074 768 ntBASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 GRK6P1-201ENST00000400595 1711 ntBASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC13.59□□□□□ -0.23
HIF3AQ9Y2N7 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.23
HIF3AQ9Y2N7 AL391825.1-201ENST00000457671 1364 ntBASIC13.58□□□□□ -0.23
HIF3AQ9Y2N7 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
HIF3AQ9Y2N7 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.23
HIF3AQ9Y2N7 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC13.58□□□□□ -0.23
HIF3AQ9Y2N7 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
HIF3AQ9Y2N7 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
HIF3AQ9Y2N7 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC13.58□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms