Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 BANP-203ENST00000393207 2438 ntTSL 2 BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 GSN-209ENST00000449733 2702 ntTSL 2 BASIC16.03■□□□□ 0.16
SIX2Q9NPC8 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
SIX2Q9NPC8 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
SIX2Q9NPC8 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SIX2Q9NPC8 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC16.03■□□□□ 0.16
SIX2Q9NPC8 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
SIX2Q9NPC8 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SIX2Q9NPC8 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
SIX2Q9NPC8 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
SIX2Q9NPC8 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SIX2Q9NPC8 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SIX2Q9NPC8 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SIX2Q9NPC8 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SIX2Q9NPC8 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SIX2Q9NPC8 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
SIX2Q9NPC8 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC16.03■□□□□ 0.16
SIX2Q9NPC8 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC16.03■□□□□ 0.16
SIX2Q9NPC8 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
SIX2Q9NPC8 AP006294.1-201ENST00000415407 339 ntBASIC16.03■□□□□ 0.16
SIX2Q9NPC8 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC16.03■□□□□ 0.16
SIX2Q9NPC8 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SIX2Q9NPC8 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC16.03■□□□□ 0.16
SIX2Q9NPC8 AC103988.2-201ENST00000561804 725 ntBASIC16.03■□□□□ 0.16
SIX2Q9NPC8 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC16.03■□□□□ 0.16
SIX2Q9NPC8 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC16.03■□□□□ 0.16
SIX2Q9NPC8 COX11-202ENST00000571584 1108 ntTSL 2 BASIC16.03■□□□□ 0.16
SIX2Q9NPC8 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC16.03■□□□□ 0.16
SIX2Q9NPC8 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
SIX2Q9NPC8 ETV2-208ENST00000621247 941 ntTSL 5 BASIC16.03■□□□□ 0.16
SIX2Q9NPC8 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SIX2Q9NPC8 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC16.03■□□□□ 0.16
SIX2Q9NPC8 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
SIX2Q9NPC8 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
SIX2Q9NPC8 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SIX2Q9NPC8 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SIX2Q9NPC8 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SIX2Q9NPC8 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SIX2Q9NPC8 AC215219.1-201ENST00000400706 1817 ntBASIC16.03■□□□□ 0.16
SIX2Q9NPC8 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC16.03■□□□□ 0.16
SIX2Q9NPC8 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
SIX2Q9NPC8 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SIX2Q9NPC8 RN7SL832P-201ENST00000607781 1756 ntBASIC16.03■□□□□ 0.16
SIX2Q9NPC8 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SIX2Q9NPC8 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC16.02■□□□□ 0.16
SIX2Q9NPC8 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.16
SIX2Q9NPC8 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
SIX2Q9NPC8 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC16.02■□□□□ 0.16
SIX2Q9NPC8 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SIX2Q9NPC8 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SIX2Q9NPC8 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
SIX2Q9NPC8 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
SIX2Q9NPC8 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
SIX2Q9NPC8 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SIX2Q9NPC8 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
SIX2Q9NPC8 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SIX2Q9NPC8 TP73-213ENST00000604479 1623 ntTSL 5 BASIC16.02■□□□□ 0.16
SIX2Q9NPC8 FKBP4P6-201ENST00000457486 1332 ntBASIC16.02■□□□□ 0.16
SIX2Q9NPC8 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SIX2Q9NPC8 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SIX2Q9NPC8 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
SIX2Q9NPC8 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
SIX2Q9NPC8 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
SIX2Q9NPC8 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SIX2Q9NPC8 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC16.02■□□□□ 0.16
SIX2Q9NPC8 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SIX2Q9NPC8 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC16.02■□□□□ 0.16
SIX2Q9NPC8 USP32P1-208ENST00000506594 1164 ntBASIC16.02■□□□□ 0.16
SIX2Q9NPC8 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC16.02■□□□□ 0.16
SIX2Q9NPC8 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
SIX2Q9NPC8 POLE2-203ENST00000553805 496 ntTSL 2 BASIC16.02■□□□□ 0.16
SIX2Q9NPC8 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC16.02■□□□□ 0.16
SIX2Q9NPC8 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SIX2Q9NPC8 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SIX2Q9NPC8 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC16.02■□□□□ 0.16
SIX2Q9NPC8 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
SIX2Q9NPC8 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
SIX2Q9NPC8 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
SIX2Q9NPC8 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
SIX2Q9NPC8 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
SIX2Q9NPC8 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC16.02■□□□□ 0.15
SIX2Q9NPC8 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SIX2Q9NPC8 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC16.02■□□□□ 0.15
SIX2Q9NPC8 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC16.02■□□□□ 0.15
SIX2Q9NPC8 AC016397.2-201ENST00000624848 1985 ntBASIC16.02■□□□□ 0.15
SIX2Q9NPC8 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SIX2Q9NPC8 AC015688.4-201ENST00000580780 1647 ntBASIC16.01■□□□□ 0.15
SIX2Q9NPC8 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms