Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 MPV17-205ENST00000402310 906 ntTSL 5 BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 AC245100.3-201ENST00000441281 285 ntBASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 FO681548.1-201ENST00000455617 1132 ntBASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 AL590640.2-201ENST00000457038 527 ntBASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 AHRR-211ENST00000515206 462 ntTSL 5 BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 AC079316.1-201ENST00000548397 411 ntBASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 ECM1P1-201ENST00000604092 1279 ntBASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 PCDHGB8P-201ENST00000502926 1973 ntBASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 MARS-233ENST00000628866 2583 ntTSL 5 BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
PTCHD1Q96NR3 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 AL136379.1-201ENST00000623471 2642 ntBASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 AC106881.1-201ENST00000605849 3329 ntBASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 STX1A-203ENST00000395155 783 ntTSL 2 BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 AC119751.2-201ENST00000504529 210 ntBASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 AC026434.2-201ENST00000506094 1078 ntBASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC14.19□□□□□ -0.14
PTCHD1Q96NR3 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC14.19□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 74.5 ms