Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
LINC00477Q96M19 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC00477Q96M19 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC00477Q96M19 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC11.31□□□□□ -0.6
LINC00477Q96M19 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
LINC00477Q96M19 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC00477Q96M19 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC11.31□□□□□ -0.6
LINC00477Q96M19 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC00477Q96M19 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC00477Q96M19 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
LINC00477Q96M19 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC11.31□□□□□ -0.6
LINC00477Q96M19 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC00477Q96M19 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC00477Q96M19 OS9-204ENST00000389146 2091 ntTSL 2 BASIC11.31□□□□□ -0.6
LINC00477Q96M19 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC11.31□□□□□ -0.6
LINC00477Q96M19 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC00477Q96M19 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC11.31□□□□□ -0.6
LINC00477Q96M19 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC11.31□□□□□ -0.6
LINC00477Q96M19 AL138799.1-201ENST00000448213 1675 ntBASIC11.31□□□□□ -0.6
LINC00477Q96M19 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC11.31□□□□□ -0.6
LINC00477Q96M19 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC00477Q96M19 SLC35D1-201ENST00000235345 6162 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC00477Q96M19 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC11.31□□□□□ -0.6
LINC00477Q96M19 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC11.31□□□□□ -0.6
LINC00477Q96M19 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC11.31□□□□□ -0.6
LINC00477Q96M19 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
LINC00477Q96M19 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
LINC00477Q96M19 VMA21-202ENST00000370361 693 ntTSL 5 BASIC11.31□□□□□ -0.6
LINC00477Q96M19 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC11.31□□□□□ -0.6
LINC00477Q96M19 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC11.31□□□□□ -0.6
LINC00477Q96M19 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC11.31□□□□□ -0.6
LINC00477Q96M19 AC092580.3-201ENST00000430932 139 ntBASIC11.31□□□□□ -0.6
LINC00477Q96M19 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC11.31□□□□□ -0.6
LINC00477Q96M19 AL353779.1-201ENST00000434793 351 ntBASIC11.31□□□□□ -0.6
LINC00477Q96M19 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC11.31□□□□□ -0.6
LINC00477Q96M19 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC11.31□□□□□ -0.6
LINC00477Q96M19 GLI4-203ENST00000517468 963 ntTSL 5 BASIC11.31□□□□□ -0.6
LINC00477Q96M19 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC11.31□□□□□ -0.6
LINC00477Q96M19 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC11.31□□□□□ -0.6
LINC00477Q96M19 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC11.31□□□□□ -0.6
LINC00477Q96M19 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC11.31□□□□□ -0.6
LINC00477Q96M19 CALM1-205ENST00000553542 877 ntTSL 5 BASIC11.31□□□□□ -0.6
LINC00477Q96M19 PRR29-204ENST00000577953 565 ntTSL 4 BASIC11.31□□□□□ -0.6
LINC00477Q96M19 AC093813.1-201ENST00000605066 256 ntBASIC11.31□□□□□ -0.6
LINC00477Q96M19 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC11.31□□□□□ -0.6
LINC00477Q96M19 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC11.31□□□□□ -0.6
LINC00477Q96M19 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC00477Q96M19 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC00477Q96M19 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC11.31□□□□□ -0.6
LINC00477Q96M19 DRD5P1-201ENST00000456605 1438 ntBASIC11.31□□□□□ -0.6
LINC00477Q96M19 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC00477Q96M19 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
LINC00477Q96M19 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC00477Q96M19 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC00477Q96M19 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC11.31□□□□□ -0.6
LINC00477Q96M19 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
LINC00477Q96M19 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC00477Q96M19 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC11.31□□□□□ -0.6
LINC00477Q96M19 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC11.31□□□□□ -0.6
LINC00477Q96M19 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC11.31□□□□□ -0.6
LINC00477Q96M19 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC11.31□□□□□ -0.6
LINC00477Q96M19 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC11.31□□□□□ -0.6
LINC00477Q96M19 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC00477Q96M19 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC00477Q96M19 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
LINC00477Q96M19 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC11.31□□□□□ -0.6
LINC00477Q96M19 GRIP2-204ENST00000619221 7977 ntAPPRIS P5 TSL 5 BASIC11.31□□□□□ -0.6
LINC00477Q96M19 AL158070.2-201ENST00000623713 1621 ntBASIC11.31□□□□□ -0.6
LINC00477Q96M19 HSPA7-201ENST00000445535 1927 ntBASIC11.31□□□□□ -0.6
LINC00477Q96M19 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC00477Q96M19 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
LINC00477Q96M19 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00477Q96M19 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC11.3□□□□□ -0.6
LINC00477Q96M19 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00477Q96M19 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
LINC00477Q96M19 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00477Q96M19 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00477Q96M19 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC11.3□□□□□ -0.6
LINC00477Q96M19 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
LINC00477Q96M19 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00477Q96M19 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00477Q96M19 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC11.3□□□□□ -0.6
LINC00477Q96M19 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00477Q96M19 DISP3-201ENST00000294484 5215 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00477Q96M19 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00477Q96M19 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00477Q96M19 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
LINC00477Q96M19 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00477Q96M19 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00477Q96M19 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC11.3□□□□□ -0.6
LINC00477Q96M19 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
LINC00477Q96M19 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC11.3□□□□□ -0.6
LINC00477Q96M19 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00477Q96M19 MYLK-203ENST00000359169 7585 ntAPPRIS P3 TSL 5 BASIC11.3□□□□□ -0.6
LINC00477Q96M19 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC11.3□□□□□ -0.6
LINC00477Q96M19 PSMC1-201ENST00000261303 4448 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00477Q96M19 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00477Q96M19 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00477Q96M19 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC11.3□□□□□ -0.6
LINC00477Q96M19 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 78.2 ms