Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC16.35■□□□□ 0.21
VPS52Q8N1B4 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS52Q8N1B4 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC16.35■□□□□ 0.21
VPS52Q8N1B4 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS52Q8N1B4 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
VPS52Q8N1B4 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS52Q8N1B4 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
VPS52Q8N1B4 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC16.35■□□□□ 0.21
VPS52Q8N1B4 AC004945.1-201ENST00000416738 983 ntBASIC16.35■□□□□ 0.21
VPS52Q8N1B4 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC16.35■□□□□ 0.21
VPS52Q8N1B4 FNTAP2-201ENST00000430308 634 ntBASIC16.35■□□□□ 0.21
VPS52Q8N1B4 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC16.35■□□□□ 0.21
VPS52Q8N1B4 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC16.35■□□□□ 0.21
VPS52Q8N1B4 APOA2-204ENST00000464492 530 ntTSL 3 BASIC16.35■□□□□ 0.21
VPS52Q8N1B4 AC091804.1-201ENST00000486888 567 ntBASIC16.35■□□□□ 0.21
VPS52Q8N1B4 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC16.35■□□□□ 0.21
VPS52Q8N1B4 SCARNA20.5-201ENST00000516991 142 ntBASIC16.35■□□□□ 0.21
VPS52Q8N1B4 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC16.35■□□□□ 0.21
VPS52Q8N1B4 NEU3-202ENST00000526068 431 ntTSL 2 BASIC16.35■□□□□ 0.21
VPS52Q8N1B4 NAT9-222ENST00000583476 583 ntTSL 3 BASIC16.35■□□□□ 0.21
VPS52Q8N1B4 AL021578.1-201ENST00000613646 709 ntBASIC16.35■□□□□ 0.21
VPS52Q8N1B4 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
VPS52Q8N1B4 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC16.35■□□□□ 0.21
VPS52Q8N1B4 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS52Q8N1B4 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
VPS52Q8N1B4 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS52Q8N1B4 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VPS52Q8N1B4 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS52Q8N1B4 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
VPS52Q8N1B4 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS52Q8N1B4 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VPS52Q8N1B4 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS52Q8N1B4 AC138028.6-201ENST00000616106 1482 ntBASIC16.35■□□□□ 0.21
VPS52Q8N1B4 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VPS52Q8N1B4 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC16.35■□□□□ 0.21
VPS52Q8N1B4 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
VPS52Q8N1B4 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS52Q8N1B4 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS52Q8N1B4 TKT-202ENST00000423516 2075 ntTSL 2 BASIC16.34■□□□□ 0.21
VPS52Q8N1B4 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC16.34■□□□□ 0.21
VPS52Q8N1B4 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC16.34■□□□□ 0.21
VPS52Q8N1B4 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VPS52Q8N1B4 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS52Q8N1B4 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS52Q8N1B4 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS52Q8N1B4 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS52Q8N1B4 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC16.34■□□□□ 0.21
VPS52Q8N1B4 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS52Q8N1B4 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS52Q8N1B4 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
VPS52Q8N1B4 C1R-202ENST00000536053 2347 ntTSL 2 BASIC16.34■□□□□ 0.21
VPS52Q8N1B4 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC16.34■□□□□ 0.21
VPS52Q8N1B4 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VPS52Q8N1B4 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS52Q8N1B4 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VPS52Q8N1B4 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC16.34■□□□□ 0.21
VPS52Q8N1B4 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS52Q8N1B4 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS52Q8N1B4 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
VPS52Q8N1B4 HNRNPA1P32-201ENST00000396326 963 ntBASIC16.34■□□□□ 0.21
VPS52Q8N1B4 AL645937.2-201ENST00000396808 931 ntBASIC16.34■□□□□ 0.21
VPS52Q8N1B4 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC16.34■□□□□ 0.21
VPS52Q8N1B4 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC16.34■□□□□ 0.21
VPS52Q8N1B4 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC16.34■□□□□ 0.21
VPS52Q8N1B4 PTPA-218ENST00000435132 618 ntTSL 2 BASIC16.34■□□□□ 0.21
VPS52Q8N1B4 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC16.34■□□□□ 0.21
VPS52Q8N1B4 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC16.34■□□□□ 0.21
VPS52Q8N1B4 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VPS52Q8N1B4 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC16.34■□□□□ 0.21
VPS52Q8N1B4 RHOQP1-201ENST00000555758 579 ntBASIC16.34■□□□□ 0.21
VPS52Q8N1B4 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC16.34■□□□□ 0.21
VPS52Q8N1B4 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC16.34■□□□□ 0.21
VPS52Q8N1B4 AC020914.3-201ENST00000594712 304 ntBASIC16.34■□□□□ 0.21
VPS52Q8N1B4 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC16.34■□□□□ 0.21
VPS52Q8N1B4 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC16.34■□□□□ 0.21
VPS52Q8N1B4 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
VPS52Q8N1B4 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS52Q8N1B4 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
VPS52Q8N1B4 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VPS52Q8N1B4 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VPS52Q8N1B4 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS52Q8N1B4 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC16.34■□□□□ 0.21
VPS52Q8N1B4 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
VPS52Q8N1B4 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS52Q8N1B4 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
VPS52Q8N1B4 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VPS52Q8N1B4 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS52Q8N1B4 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS52Q8N1B4 FAM45BP-202ENST00000592932 1624 ntBASIC16.34■□□□□ 0.21
VPS52Q8N1B4 AL158070.2-201ENST00000623713 1621 ntBASIC16.34■□□□□ 0.21
VPS52Q8N1B4 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
VPS52Q8N1B4 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
VPS52Q8N1B4 AC092127.1-201ENST00000567093 3455 ntBASIC16.33■□□□□ 0.21
VPS52Q8N1B4 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
VPS52Q8N1B4 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC16.33■□□□□ 0.21
VPS52Q8N1B4 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
VPS52Q8N1B4 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
VPS52Q8N1B4 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC16.33■□□□□ 0.21
VPS52Q8N1B4 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VPS52Q8N1B4 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 982.6 ms