Protein–RNA interactions for Protein: Q86TL0

ATG4D, Cysteine protease ATG4D, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4DQ86TL0 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
ATG4DQ86TL0 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
ATG4DQ86TL0 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
ATG4DQ86TL0 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
ATG4DQ86TL0 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC13.63□□□□□ -0.23
ATG4DQ86TL0 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC13.63□□□□□ -0.23
ATG4DQ86TL0 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
ATG4DQ86TL0 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
ATG4DQ86TL0 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
ATG4DQ86TL0 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC13.62□□□□□ -0.23
ATG4DQ86TL0 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
ATG4DQ86TL0 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
ATG4DQ86TL0 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
ATG4DQ86TL0 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
ATG4DQ86TL0 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC13.62□□□□□ -0.23
ATG4DQ86TL0 AL136379.1-201ENST00000623471 2642 ntBASIC13.62□□□□□ -0.23
ATG4DQ86TL0 AC003102.2-201ENST00000589195 1469 ntBASIC13.62□□□□□ -0.23
ATG4DQ86TL0 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC13.62□□□□□ -0.23
ATG4DQ86TL0 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
ATG4DQ86TL0 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
ATG4DQ86TL0 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC13.62□□□□□ -0.23
ATG4DQ86TL0 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
ATG4DQ86TL0 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
ATG4DQ86TL0 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC13.62□□□□□ -0.23
ATG4DQ86TL0 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
ATG4DQ86TL0 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC13.62□□□□□ -0.23
ATG4DQ86TL0 BAATP1-201ENST00000412284 1225 ntBASIC13.62□□□□□ -0.23
ATG4DQ86TL0 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC13.62□□□□□ -0.23
ATG4DQ86TL0 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC13.62□□□□□ -0.23
ATG4DQ86TL0 AC007969.1-201ENST00000433675 447 ntBASIC13.62□□□□□ -0.23
ATG4DQ86TL0 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
ATG4DQ86TL0 ACA64.2-201ENST00000459014 129 ntBASIC13.62□□□□□ -0.23
ATG4DQ86TL0 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
ATG4DQ86TL0 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC13.62□□□□□ -0.23
ATG4DQ86TL0 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
ATG4DQ86TL0 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC13.62□□□□□ -0.23
ATG4DQ86TL0 MIR5189-201ENST00000577370 114 ntBASIC13.62□□□□□ -0.23
ATG4DQ86TL0 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC13.62□□□□□ -0.23
ATG4DQ86TL0 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC13.62□□□□□ -0.23
ATG4DQ86TL0 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
ATG4DQ86TL0 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
ATG4DQ86TL0 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC13.62□□□□□ -0.23
ATG4DQ86TL0 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
ATG4DQ86TL0 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
ATG4DQ86TL0 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC13.62□□□□□ -0.23
ATG4DQ86TL0 AC015802.1-201ENST00000588104 1449 ntBASIC13.62□□□□□ -0.23
ATG4DQ86TL0 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
ATG4DQ86TL0 USP28-214ENST00000545540 3431 ntTSL 2 BASIC13.62□□□□□ -0.23
ATG4DQ86TL0 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
ATG4DQ86TL0 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
ATG4DQ86TL0 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
ATG4DQ86TL0 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
ATG4DQ86TL0 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC13.62□□□□□ -0.23
ATG4DQ86TL0 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
ATG4DQ86TL0 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
ATG4DQ86TL0 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC13.62□□□□□ -0.23
ATG4DQ86TL0 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
ATG4DQ86TL0 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
ATG4DQ86TL0 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
ATG4DQ86TL0 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
ATG4DQ86TL0 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
ATG4DQ86TL0 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
ATG4DQ86TL0 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
ATG4DQ86TL0 SALL4P5-201ENST00000419001 1760 ntBASIC13.61□□□□□ -0.23
ATG4DQ86TL0 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
ATG4DQ86TL0 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
ATG4DQ86TL0 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
ATG4DQ86TL0 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
ATG4DQ86TL0 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
ATG4DQ86TL0 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
ATG4DQ86TL0 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
ATG4DQ86TL0 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
ATG4DQ86TL0 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
ATG4DQ86TL0 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
ATG4DQ86TL0 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
ATG4DQ86TL0 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
ATG4DQ86TL0 SERF2-209ENST00000409646 559 ntTSL 4 BASIC13.61□□□□□ -0.23
ATG4DQ86TL0 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
ATG4DQ86TL0 FO681548.1-201ENST00000455617 1132 ntBASIC13.61□□□□□ -0.23
ATG4DQ86TL0 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
ATG4DQ86TL0 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
ATG4DQ86TL0 PTP4A1P2-201ENST00000546033 454 ntBASIC13.61□□□□□ -0.23
ATG4DQ86TL0 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC13.61□□□□□ -0.23
ATG4DQ86TL0 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
ATG4DQ86TL0 AL162274.1-201ENST00000617191 1098 ntBASIC13.61□□□□□ -0.23
ATG4DQ86TL0 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
ATG4DQ86TL0 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
ATG4DQ86TL0 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC13.61□□□□□ -0.23
ATG4DQ86TL0 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC13.61□□□□□ -0.23
ATG4DQ86TL0 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
ATG4DQ86TL0 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
ATG4DQ86TL0 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
ATG4DQ86TL0 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC13.61□□□□□ -0.23
ATG4DQ86TL0 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC13.61□□□□□ -0.23
ATG4DQ86TL0 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC13.61□□□□□ -0.23
ATG4DQ86TL0 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
ATG4DQ86TL0 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC13.61□□□□□ -0.23
ATG4DQ86TL0 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
ATG4DQ86TL0 AC134312.5-201ENST00000568031 1313 ntBASIC13.61□□□□□ -0.23
ATG4DQ86TL0 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms