Protein–RNA interactions for Protein: Q7Z3Y7

KRT28, Keratin, type I cytoskeletal 28, humanhuman

Predictions only

Length 464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28Q7Z3Y7 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
KRT28Q7Z3Y7 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
KRT28Q7Z3Y7 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC19.9■□□□□ 0.78
KRT28Q7Z3Y7 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC19.9■□□□□ 0.78
KRT28Q7Z3Y7 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC19.9■□□□□ 0.78
KRT28Q7Z3Y7 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
KRT28Q7Z3Y7 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
KRT28Q7Z3Y7 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC19.9■□□□□ 0.78
KRT28Q7Z3Y7 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC19.9■□□□□ 0.78
KRT28Q7Z3Y7 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
KRT28Q7Z3Y7 AL365436.2-201ENST00000434112 526 ntTSL 4 BASIC19.9■□□□□ 0.78
KRT28Q7Z3Y7 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC19.9■□□□□ 0.78
KRT28Q7Z3Y7 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC19.9■□□□□ 0.78
KRT28Q7Z3Y7 SLC25A21-203ENST00000555449 1023 ntAPPRIS ALT1 TSL 2 BASIC19.9■□□□□ 0.78
KRT28Q7Z3Y7 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC19.9■□□□□ 0.78
KRT28Q7Z3Y7 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC19.9■□□□□ 0.78
KRT28Q7Z3Y7 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
KRT28Q7Z3Y7 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
KRT28Q7Z3Y7 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC19.9■□□□□ 0.78
KRT28Q7Z3Y7 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
KRT28Q7Z3Y7 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
KRT28Q7Z3Y7 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC19.9■□□□□ 0.78
KRT28Q7Z3Y7 AL590440.2-201ENST00000641973 1595 ntBASIC19.9■□□□□ 0.78
KRT28Q7Z3Y7 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC19.9■□□□□ 0.78
KRT28Q7Z3Y7 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
KRT28Q7Z3Y7 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
KRT28Q7Z3Y7 API5-208ENST00000531273 1868 ntTSL 2 BASIC19.9■□□□□ 0.78
KRT28Q7Z3Y7 AC087481.3-201ENST00000602886 1894 ntBASIC19.9■□□□□ 0.78
KRT28Q7Z3Y7 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC19.9■□□□□ 0.78
KRT28Q7Z3Y7 BID-213ENST00000615414 2236 ntTSL 5 BASIC19.9■□□□□ 0.78
KRT28Q7Z3Y7 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC19.9■□□□□ 0.78
KRT28Q7Z3Y7 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
KRT28Q7Z3Y7 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
KRT28Q7Z3Y7 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC19.89■□□□□ 0.78
KRT28Q7Z3Y7 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC19.89■□□□□ 0.78
KRT28Q7Z3Y7 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
KRT28Q7Z3Y7 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC19.89■□□□□ 0.77
KRT28Q7Z3Y7 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
KRT28Q7Z3Y7 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC19.89■□□□□ 0.77
KRT28Q7Z3Y7 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC19.89■□□□□ 0.77
KRT28Q7Z3Y7 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
KRT28Q7Z3Y7 RN7SKP109-201ENST00000410592 316 ntBASIC19.89■□□□□ 0.77
KRT28Q7Z3Y7 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC19.89■□□□□ 0.77
KRT28Q7Z3Y7 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
KRT28Q7Z3Y7 ERP29P1-201ENST00000442902 706 ntBASIC19.89■□□□□ 0.77
KRT28Q7Z3Y7 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
KRT28Q7Z3Y7 RPL18AP8-201ENST00000486071 528 ntBASIC19.89■□□□□ 0.77
KRT28Q7Z3Y7 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC19.89■□□□□ 0.77
KRT28Q7Z3Y7 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC19.89■□□□□ 0.77
KRT28Q7Z3Y7 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC19.89■□□□□ 0.77
KRT28Q7Z3Y7 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
KRT28Q7Z3Y7 AC012158.2-201ENST00000536546 354 ntBASIC19.89■□□□□ 0.77
KRT28Q7Z3Y7 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC19.89■□□□□ 0.77
KRT28Q7Z3Y7 AC068867.1-201ENST00000559855 150 ntBASIC19.89■□□□□ 0.77
KRT28Q7Z3Y7 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC19.89■□□□□ 0.77
KRT28Q7Z3Y7 AC124068.2-201ENST00000569473 1109 ntBASIC19.89■□□□□ 0.77
KRT28Q7Z3Y7 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
KRT28Q7Z3Y7 MIR2392-201ENST00000584881 84 ntBASIC19.89■□□□□ 0.77
KRT28Q7Z3Y7 MRPL37P1-201ENST00000592451 1337 ntBASIC19.89■□□□□ 0.77
KRT28Q7Z3Y7 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC19.89■□□□□ 0.77
KRT28Q7Z3Y7 NAMA-206ENST00000605377 509 ntTSL 5 BASIC19.89■□□□□ 0.77
KRT28Q7Z3Y7 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
KRT28Q7Z3Y7 AC011471.3-201ENST00000623576 402 ntBASIC19.89■□□□□ 0.77
KRT28Q7Z3Y7 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
KRT28Q7Z3Y7 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
KRT28Q7Z3Y7 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
KRT28Q7Z3Y7 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
KRT28Q7Z3Y7 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
KRT28Q7Z3Y7 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
KRT28Q7Z3Y7 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC19.88■□□□□ 0.77
KRT28Q7Z3Y7 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
KRT28Q7Z3Y7 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC19.88■□□□□ 0.77
KRT28Q7Z3Y7 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC19.88■□□□□ 0.77
KRT28Q7Z3Y7 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
KRT28Q7Z3Y7 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
KRT28Q7Z3Y7 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC19.88■□□□□ 0.77
KRT28Q7Z3Y7 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC19.88■□□□□ 0.77
KRT28Q7Z3Y7 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
KRT28Q7Z3Y7 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
KRT28Q7Z3Y7 AC009093.10-201ENST00000641956 1442 ntBASIC19.88■□□□□ 0.77
KRT28Q7Z3Y7 OBSCN-AS1-201ENST00000295012 889 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
KRT28Q7Z3Y7 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
KRT28Q7Z3Y7 KRT17P4-201ENST00000429445 819 ntBASIC19.88■□□□□ 0.77
KRT28Q7Z3Y7 ST13P19-201ENST00000442505 1124 ntBASIC19.88■□□□□ 0.77
KRT28Q7Z3Y7 RPL35P9-201ENST00000446059 350 ntBASIC19.88■□□□□ 0.77
KRT28Q7Z3Y7 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
KRT28Q7Z3Y7 RN7SL277P-201ENST00000481521 288 ntBASIC19.88■□□□□ 0.77
KRT28Q7Z3Y7 CD164-210ENST00000512821 964 ntTSL 2 BASIC19.88■□□□□ 0.77
KRT28Q7Z3Y7 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC19.88■□□□□ 0.77
KRT28Q7Z3Y7 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC19.88■□□□□ 0.77
KRT28Q7Z3Y7 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC19.88■□□□□ 0.77
KRT28Q7Z3Y7 AC068025.1-201ENST00000577218 762 ntTSL 3 BASIC19.88■□□□□ 0.77
KRT28Q7Z3Y7 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
KRT28Q7Z3Y7 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
KRT28Q7Z3Y7 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
KRT28Q7Z3Y7 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC19.88■□□□□ 0.77
KRT28Q7Z3Y7 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC19.88■□□□□ 0.77
KRT28Q7Z3Y7 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
KRT28Q7Z3Y7 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC19.88■□□□□ 0.77
KRT28Q7Z3Y7 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 60.7 ms