Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
PPP4R4Q6NUP7 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
PPP4R4Q6NUP7 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PPP4R4Q6NUP7 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
PPP4R4Q6NUP7 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
PPP4R4Q6NUP7 SLC35D1-201ENST00000235345 6162 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PPP4R4Q6NUP7 PPP5D1-201ENST00000414155 1882 ntAPPRIS P5 TSL 2 BASIC14.51□□□□□ -0.09
PPP4R4Q6NUP7 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PPP4R4Q6NUP7 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
PPP4R4Q6NUP7 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PPP4R4Q6NUP7 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PPP4R4Q6NUP7 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC14.51□□□□□ -0.09
PPP4R4Q6NUP7 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PPP4R4Q6NUP7 HNRNPA3P1-201ENST00000401429 1139 ntBASIC14.51□□□□□ -0.09
PPP4R4Q6NUP7 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC14.51□□□□□ -0.09
PPP4R4Q6NUP7 HMGN1P19-201ENST00000436976 333 ntBASIC14.51□□□□□ -0.09
PPP4R4Q6NUP7 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PPP4R4Q6NUP7 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC14.51□□□□□ -0.09
PPP4R4Q6NUP7 HNRNPA3P5-201ENST00000455201 833 ntBASIC14.51□□□□□ -0.09
PPP4R4Q6NUP7 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
PPP4R4Q6NUP7 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
PPP4R4Q6NUP7 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC14.51□□□□□ -0.09
PPP4R4Q6NUP7 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PPP4R4Q6NUP7 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC14.51□□□□□ -0.09
PPP4R4Q6NUP7 AC005498.2-205ENST00000593218 784 ntBASIC14.51□□□□□ -0.09
PPP4R4Q6NUP7 AC073592.8-201ENST00000624126 511 ntBASIC14.51□□□□□ -0.09
PPP4R4Q6NUP7 FAM171B-201ENST00000304698 5826 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PPP4R4Q6NUP7 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
PPP4R4Q6NUP7 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PPP4R4Q6NUP7 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
PPP4R4Q6NUP7 SERTAD2-201ENST00000313349 5549 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PPP4R4Q6NUP7 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC14.51□□□□□ -0.09
PPP4R4Q6NUP7 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
PPP4R4Q6NUP7 NR3C2-209ENST00000625323 5909 ntTSL 5 BASIC14.51□□□□□ -0.09
PPP4R4Q6NUP7 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PPP4R4Q6NUP7 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
PPP4R4Q6NUP7 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC14.51□□□□□ -0.09
PPP4R4Q6NUP7 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC14.51□□□□□ -0.09
PPP4R4Q6NUP7 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PPP4R4Q6NUP7 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PPP4R4Q6NUP7 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 AL035456.1-201ENST00000456064 1369 ntBASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 CA12-201ENST00000178638 6413 ntAPPRIS P4 TSL 1 (best) BASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 INGX-202ENST00000489074 768 ntBASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 SATB1-217ENST00000493952 626 ntTSL 3 BASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 DUT-210ENST00000559935 569 ntTSL 3 BASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 LITAF-210ENST00000571976 548 ntTSL 2 BASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 LITAF-214ENST00000574703 486 ntTSL 2 BASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 RN7SL828P-201ENST00000607615 303 ntBASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 SPDYE12P-201ENST00000618416 771 ntBASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 SPTBN2-201ENST00000309996 7866 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 CR383656.2-201ENST00000548656 2254 ntBASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 NUP133-201ENST00000261396 5207 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
PPP4R4Q6NUP7 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
PPP4R4Q6NUP7 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
PPP4R4Q6NUP7 USP49-203ENST00000394253 9034 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
PPP4R4Q6NUP7 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
PPP4R4Q6NUP7 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 73.4 ms