Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 UPF3AP2-201ENST00000457924 1132 ntBASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 IMP3P2-201ENST00000489760 475 ntBASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 AC106794.1-201ENST00000506935 792 ntBASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 AC132192.2-201ENST00000596206 1147 ntBASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC13.46□□□□□ -0.25
RNFT1Q5M7Z0 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
RNFT1Q5M7Z0 AC008132.1-202ENST00000342005 1389 ntBASIC13.46□□□□□ -0.25
RNFT1Q5M7Z0 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
RNFT1Q5M7Z0 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC13.46□□□□□ -0.25
RNFT1Q5M7Z0 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.25
RNFT1Q5M7Z0 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC13.46□□□□□ -0.25
RNFT1Q5M7Z0 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.25
RNFT1Q5M7Z0 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
RNFT1Q5M7Z0 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
RNFT1Q5M7Z0 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC13.46□□□□□ -0.25
RNFT1Q5M7Z0 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
RNFT1Q5M7Z0 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
RNFT1Q5M7Z0 SALL4P5-201ENST00000419001 1760 ntBASIC13.46□□□□□ -0.25
RNFT1Q5M7Z0 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC13.46□□□□□ -0.25
RNFT1Q5M7Z0 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
RNFT1Q5M7Z0 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
RNFT1Q5M7Z0 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
RNFT1Q5M7Z0 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
RNFT1Q5M7Z0 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
RNFT1Q5M7Z0 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
RNFT1Q5M7Z0 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
RNFT1Q5M7Z0 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
RNFT1Q5M7Z0 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
RNFT1Q5M7Z0 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
RNFT1Q5M7Z0 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
RNFT1Q5M7Z0 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC13.46□□□□□ -0.25
RNFT1Q5M7Z0 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC13.46□□□□□ -0.25
RNFT1Q5M7Z0 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
RNFT1Q5M7Z0 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
RNFT1Q5M7Z0 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC13.46□□□□□ -0.25
RNFT1Q5M7Z0 RN7SL11P-201ENST00000471305 293 ntBASIC13.46□□□□□ -0.25
RNFT1Q5M7Z0 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC13.46□□□□□ -0.25
RNFT1Q5M7Z0 RERG-205ENST00000537647 935 ntTSL 2 BASIC13.46□□□□□ -0.25
RNFT1Q5M7Z0 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC13.46□□□□□ -0.25
RNFT1Q5M7Z0 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC13.46□□□□□ -0.25
RNFT1Q5M7Z0 AC079328.1-201ENST00000560358 952 ntBASIC13.46□□□□□ -0.25
RNFT1Q5M7Z0 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC13.46□□□□□ -0.25
RNFT1Q5M7Z0 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC13.46□□□□□ -0.25
RNFT1Q5M7Z0 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC13.46□□□□□ -0.25
RNFT1Q5M7Z0 AC090164.2-201ENST00000611487 516 ntBASIC13.46□□□□□ -0.25
RNFT1Q5M7Z0 AC091544.8-201ENST00000619490 361 ntBASIC13.46□□□□□ -0.25
RNFT1Q5M7Z0 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
RNFT1Q5M7Z0 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
RNFT1Q5M7Z0 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC13.46□□□□□ -0.25
RNFT1Q5M7Z0 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.25
RNFT1Q5M7Z0 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.26
RNFT1Q5M7Z0 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC13.46□□□□□ -0.26
RNFT1Q5M7Z0 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC13.46□□□□□ -0.26
RNFT1Q5M7Z0 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC13.46□□□□□ -0.26
RNFT1Q5M7Z0 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
RNFT1Q5M7Z0 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC13.46□□□□□ -0.26
RNFT1Q5M7Z0 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC13.46□□□□□ -0.26
RNFT1Q5M7Z0 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
RNFT1Q5M7Z0 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
RNFT1Q5M7Z0 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC13.46□□□□□ -0.26
RNFT1Q5M7Z0 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.26
RNFT1Q5M7Z0 AC013726.1-201ENST00000563747 2285 ntBASIC13.46□□□□□ -0.26
RNFT1Q5M7Z0 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC13.46□□□□□ -0.26
RNFT1Q5M7Z0 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.26
RNFT1Q5M7Z0 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 WASH3P-207ENST00000560956 1394 ntBASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms