Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
COL28A1Q2UY09 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
COL28A1Q2UY09 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL28A1Q2UY09 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
COL28A1Q2UY09 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL28A1Q2UY09 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC14.51□□□□□ -0.09
COL28A1Q2UY09 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 R3HDM2P2-201ENST00000401880 2116 ntBASIC14.5□□□□□ -0.09
COL28A1Q2UY09 KRT8P35-201ENST00000483942 1338 ntBASIC14.5□□□□□ -0.09
COL28A1Q2UY09 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 FLII-221ENST00000578558 2377 ntTSL 5 BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 SLED1-202ENST00000512051 380 ntBASIC14.5□□□□□ -0.09
COL28A1Q2UY09 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 CENPX-208ENST00000584347 799 ntTSL 2 BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 WDR7-208ENST00000589935 544 ntTSL 4 BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 AL645939.5-201ENST00000606834 243 ntBASIC14.5□□□□□ -0.09
COL28A1Q2UY09 AF254983.2-201ENST00000612331 135 ntBASIC14.5□□□□□ -0.09
COL28A1Q2UY09 AC244157.2-201ENST00000616239 1006 ntBASIC14.5□□□□□ -0.09
COL28A1Q2UY09 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL28A1Q2UY09 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL28A1Q2UY09 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC14.49□□□□□ -0.09
COL28A1Q2UY09 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL28A1Q2UY09 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
COL28A1Q2UY09 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL28A1Q2UY09 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC14.49□□□□□ -0.09
COL28A1Q2UY09 AC073347.1-201ENST00000421633 2643 ntBASIC14.49□□□□□ -0.09
COL28A1Q2UY09 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC14.49□□□□□ -0.09
COL28A1Q2UY09 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL28A1Q2UY09 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL28A1Q2UY09 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
COL28A1Q2UY09 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
COL28A1Q2UY09 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL28A1Q2UY09 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL28A1Q2UY09 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL28A1Q2UY09 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
COL28A1Q2UY09 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL28A1Q2UY09 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL28A1Q2UY09 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL28A1Q2UY09 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC14.49□□□□□ -0.09
COL28A1Q2UY09 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL28A1Q2UY09 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC14.49□□□□□ -0.09
COL28A1Q2UY09 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL28A1Q2UY09 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL28A1Q2UY09 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL28A1Q2UY09 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC14.49□□□□□ -0.09
COL28A1Q2UY09 RPSAP31-201ENST00000416648 895 ntBASIC14.49□□□□□ -0.09
COL28A1Q2UY09 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL28A1Q2UY09 AC011742.3-201ENST00000439053 820 ntBASIC14.49□□□□□ -0.09
COL28A1Q2UY09 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC14.49□□□□□ -0.09
COL28A1Q2UY09 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL28A1Q2UY09 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC14.49□□□□□ -0.09
COL28A1Q2UY09 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC14.49□□□□□ -0.09
COL28A1Q2UY09 AC005740.2-201ENST00000511085 419 ntBASIC14.49□□□□□ -0.09
COL28A1Q2UY09 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC14.49□□□□□ -0.09
COL28A1Q2UY09 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC14.49□□□□□ -0.09
COL28A1Q2UY09 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms