Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
RNF4P78317 SNX21-203ENST00000372541 771 ntTSL 2 BASIC13.93□□□□□ -0.18
RNF4P78317 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
RNF4P78317 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC13.93□□□□□ -0.18
RNF4P78317 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC13.93□□□□□ -0.18
RNF4P78317 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC13.93□□□□□ -0.18
RNF4P78317 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC13.93□□□□□ -0.18
RNF4P78317 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC13.93□□□□□ -0.18
RNF4P78317 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC13.93□□□□□ -0.18
RNF4P78317 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
RNF4P78317 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC13.93□□□□□ -0.18
RNF4P78317 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
RNF4P78317 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC13.93□□□□□ -0.18
RNF4P78317 OR10B1P-201ENST00000601666 907 ntBASIC13.93□□□□□ -0.18
RNF4P78317 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
RNF4P78317 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
RNF4P78317 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
RNF4P78317 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
RNF4P78317 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
RNF4P78317 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
RNF4P78317 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
RNF4P78317 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC13.93□□□□□ -0.18
RNF4P78317 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC13.93□□□□□ -0.18
RNF4P78317 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
RNF4P78317 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
RNF4P78317 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC13.93□□□□□ -0.18
RNF4P78317 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
RNF4P78317 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC13.92□□□□□ -0.18
RNF4P78317 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
RNF4P78317 FKBP4P6-201ENST00000457486 1332 ntBASIC13.92□□□□□ -0.18
RNF4P78317 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
RNF4P78317 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
RNF4P78317 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
RNF4P78317 ELK1-201ENST00000247161 2695 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
RNF4P78317 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
RNF4P78317 GSN-215ENST00000545652 2428 ntTSL 2 BASIC13.92□□□□□ -0.18
RNF4P78317 LINC00528-201ENST00000600723 2160 ntBASIC13.92□□□□□ -0.18
RNF4P78317 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
RNF4P78317 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
RNF4P78317 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
RNF4P78317 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC13.92□□□□□ -0.18
RNF4P78317 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
RNF4P78317 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
RNF4P78317 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
RNF4P78317 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC13.92□□□□□ -0.18
RNF4P78317 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
RNF4P78317 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
RNF4P78317 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC13.92□□□□□ -0.18
RNF4P78317 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
RNF4P78317 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
RNF4P78317 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
RNF4P78317 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
RNF4P78317 AL391280.1-201ENST00000506969 1062 ntBASIC13.92□□□□□ -0.18
RNF4P78317 COX5BP1-201ENST00000507622 393 ntBASIC13.92□□□□□ -0.18
RNF4P78317 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC13.92□□□□□ -0.18
RNF4P78317 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
RNF4P78317 AC106820.3-201ENST00000561653 397 ntBASIC13.92□□□□□ -0.18
RNF4P78317 DUX4L45-201ENST00000566406 1057 ntBASIC13.92□□□□□ -0.18
RNF4P78317 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC13.92□□□□□ -0.18
RNF4P78317 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
RNF4P78317 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
RNF4P78317 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
RNF4P78317 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC13.92□□□□□ -0.18
RNF4P78317 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
RNF4P78317 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
RNF4P78317 PCDHA3-202ENST00000532566 4594 ntBASIC13.92□□□□□ -0.18
RNF4P78317 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC13.92□□□□□ -0.18
RNF4P78317 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
RNF4P78317 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC13.92□□□□□ -0.18
RNF4P78317 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
RNF4P78317 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC13.92□□□□□ -0.18
RNF4P78317 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC13.92□□□□□ -0.18
RNF4P78317 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC13.92□□□□□ -0.18
RNF4P78317 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
RNF4P78317 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
RNF4P78317 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
RNF4P78317 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
RNF4P78317 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
RNF4P78317 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
RNF4P78317 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
RNF4P78317 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC13.91□□□□□ -0.18
RNF4P78317 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC13.91□□□□□ -0.18
RNF4P78317 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC13.91□□□□□ -0.18
RNF4P78317 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
RNF4P78317 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
RNF4P78317 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
RNF4P78317 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
RNF4P78317 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC13.91□□□□□ -0.18
RNF4P78317 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC13.91□□□□□ -0.18
RNF4P78317 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
RNF4P78317 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC13.91□□□□□ -0.18
RNF4P78317 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
RNF4P78317 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC13.91□□□□□ -0.18
RNF4P78317 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
RNF4P78317 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC13.91□□□□□ -0.18
RNF4P78317 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
RNF4P78317 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
RNF4P78317 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
RNF4P78317 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
RNF4P78317 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms