Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC15.72■□□□□ 0.11
HDAC4P56524 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
HDAC4P56524 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
HDAC4P56524 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC15.72■□□□□ 0.11
HDAC4P56524 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC15.72■□□□□ 0.11
HDAC4P56524 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
HDAC4P56524 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
HDAC4P56524 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
HDAC4P56524 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
HDAC4P56524 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
HDAC4P56524 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC15.72■□□□□ 0.11
HDAC4P56524 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
HDAC4P56524 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
HDAC4P56524 COPE-202ENST00000349893 948 ntTSL 2 BASIC15.72■□□□□ 0.11
HDAC4P56524 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
HDAC4P56524 GRAP-202ENST00000395635 834 ntTSL 2 BASIC15.72■□□□□ 0.11
HDAC4P56524 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
HDAC4P56524 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC15.72■□□□□ 0.11
HDAC4P56524 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC15.72■□□□□ 0.11
HDAC4P56524 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC15.72■□□□□ 0.11
HDAC4P56524 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC15.72■□□□□ 0.11
HDAC4P56524 AC008735.3-201ENST00000596646 500 ntBASIC15.72■□□□□ 0.11
HDAC4P56524 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC15.72■□□□□ 0.11
HDAC4P56524 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC15.72■□□□□ 0.11
HDAC4P56524 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
HDAC4P56524 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
HDAC4P56524 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC15.72■□□□□ 0.11
HDAC4P56524 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC15.72■□□□□ 0.11
HDAC4P56524 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
HDAC4P56524 AL138709.1-201ENST00000614840 1693 ntBASIC15.72■□□□□ 0.11
HDAC4P56524 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC15.72■□□□□ 0.11
HDAC4P56524 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC15.72■□□□□ 0.11
HDAC4P56524 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
HDAC4P56524 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC15.72■□□□□ 0.11
HDAC4P56524 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
HDAC4P56524 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC15.72■□□□□ 0.11
HDAC4P56524 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC15.72■□□□□ 0.11
HDAC4P56524 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
HDAC4P56524 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC15.72■□□□□ 0.11
HDAC4P56524 AC097376.2-205ENST00000610159 5334 ntBASIC15.72■□□□□ 0.11
HDAC4P56524 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
HDAC4P56524 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC15.72■□□□□ 0.11
HDAC4P56524 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC15.72■□□□□ 0.11
HDAC4P56524 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
HDAC4P56524 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
HDAC4P56524 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC15.72■□□□□ 0.11
HDAC4P56524 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
HDAC4P56524 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HDAC4P56524 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
HDAC4P56524 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
HDAC4P56524 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC15.71■□□□□ 0.11
HDAC4P56524 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC15.71■□□□□ 0.11
HDAC4P56524 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HDAC4P56524 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HDAC4P56524 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HDAC4P56524 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HDAC4P56524 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HDAC4P56524 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
HDAC4P56524 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HDAC4P56524 AC007686.3-201ENST00000619017 3487 ntBASIC15.71■□□□□ 0.11
HDAC4P56524 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC15.71■□□□□ 0.11
HDAC4P56524 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
HDAC4P56524 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC15.71■□□□□ 0.11
HDAC4P56524 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC15.71■□□□□ 0.11
HDAC4P56524 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HDAC4P56524 TTTY23B-201ENST00000442790 549 ntBASIC15.71■□□□□ 0.11
HDAC4P56524 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC15.71■□□□□ 0.11
HDAC4P56524 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC15.71■□□□□ 0.11
HDAC4P56524 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
HDAC4P56524 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC15.71■□□□□ 0.11
HDAC4P56524 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
HDAC4P56524 GNRHR2-203ENST00000581100 1187 ntBASIC15.71■□□□□ 0.11
HDAC4P56524 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC15.71■□□□□ 0.11
HDAC4P56524 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
HDAC4P56524 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC15.71■□□□□ 0.11
HDAC4P56524 AC015936.2-201ENST00000593177 259 ntBASIC15.71■□□□□ 0.11
HDAC4P56524 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC15.71■□□□□ 0.11
HDAC4P56524 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC15.71■□□□□ 0.11
HDAC4P56524 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC15.71■□□□□ 0.11
HDAC4P56524 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC15.71■□□□□ 0.11
HDAC4P56524 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC15.71■□□□□ 0.11
HDAC4P56524 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HDAC4P56524 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HDAC4P56524 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
HDAC4P56524 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HDAC4P56524 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
HDAC4P56524 TP73-213ENST00000604479 1623 ntTSL 5 BASIC15.71■□□□□ 0.11
HDAC4P56524 AC018665.1-201ENST00000622927 1362 ntBASIC15.71■□□□□ 0.11
HDAC4P56524 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HDAC4P56524 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.1
HDAC4P56524 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.1
HDAC4P56524 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
HDAC4P56524 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC15.71■□□□□ 0.1
HDAC4P56524 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC15.71■□□□□ 0.1
HDAC4P56524 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
HDAC4P56524 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDAC4P56524 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC15.7■□□□□ 0.1
HDAC4P56524 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDAC4P56524 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
HDAC4P56524 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 64.7 ms