Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC14.21□□□□□ -0.13
RFX3P48380 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC14.21□□□□□ -0.13
RFX3P48380 AP001582.1-201ENST00000525856 295 ntBASIC14.21□□□□□ -0.13
RFX3P48380 WASH4P-201ENST00000564273 1246 ntBASIC14.21□□□□□ -0.13
RFX3P48380 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC14.21□□□□□ -0.13
RFX3P48380 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC14.21□□□□□ -0.13
RFX3P48380 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC14.21□□□□□ -0.13
RFX3P48380 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC14.21□□□□□ -0.13
RFX3P48380 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC14.21□□□□□ -0.13
RFX3P48380 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
RFX3P48380 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC14.21□□□□□ -0.13
RFX3P48380 AL157414.3-201ENST00000624276 1954 ntBASIC14.21□□□□□ -0.13
RFX3P48380 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
RFX3P48380 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RFX3P48380 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RFX3P48380 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC14.21□□□□□ -0.13
RFX3P48380 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RFX3P48380 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
RFX3P48380 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
RFX3P48380 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.14
RFX3P48380 RALGAPA1-201ENST00000307138 7911 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
RFX3P48380 AL391825.1-201ENST00000457671 1364 ntBASIC14.21□□□□□ -0.14
RFX3P48380 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
RFX3P48380 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
RFX3P48380 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC14.2□□□□□ -0.14
RFX3P48380 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
RFX3P48380 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RFX3P48380 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
RFX3P48380 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RFX3P48380 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
RFX3P48380 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
RFX3P48380 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
RFX3P48380 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC14.2□□□□□ -0.14
RFX3P48380 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC14.2□□□□□ -0.14
RFX3P48380 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC14.2□□□□□ -0.14
RFX3P48380 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
RFX3P48380 SAMD4A-202ENST00000392067 6833 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
RFX3P48380 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC14.2□□□□□ -0.14
RFX3P48380 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC14.2□□□□□ -0.14
RFX3P48380 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
RFX3P48380 ZBED1P1-201ENST00000502364 1930 ntBASIC14.2□□□□□ -0.14
RFX3P48380 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RFX3P48380 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
RFX3P48380 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
RFX3P48380 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC14.2□□□□□ -0.14
RFX3P48380 GALT-202ENST00000450095 1280 ntTSL 2 BASIC14.2□□□□□ -0.14
RFX3P48380 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
RFX3P48380 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC14.2□□□□□ -0.14
RFX3P48380 AL359711.2-201ENST00000563105 872 ntBASIC14.2□□□□□ -0.14
RFX3P48380 AC120045.2-201ENST00000567334 178 ntBASIC14.2□□□□□ -0.14
RFX3P48380 AC140912.1-201ENST00000577171 1054 ntBASIC14.2□□□□□ -0.14
RFX3P48380 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
RFX3P48380 AL662799.1-202ENST00000614205 422 ntBASIC14.2□□□□□ -0.14
RFX3P48380 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC14.2□□□□□ -0.14
RFX3P48380 ANKH-201ENST00000284268 8203 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RFX3P48380 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
RFX3P48380 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RFX3P48380 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
RFX3P48380 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC14.2□□□□□ -0.14
RFX3P48380 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RFX3P48380 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RFX3P48380 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RFX3P48380 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
RFX3P48380 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RFX3P48380 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
RFX3P48380 AC007191.1-201ENST00000623179 2995 ntBASIC14.2□□□□□ -0.14
RFX3P48380 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RFX3P48380 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RFX3P48380 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
RFX3P48380 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC14.2□□□□□ -0.14
RFX3P48380 AL138799.1-201ENST00000448213 1675 ntBASIC14.2□□□□□ -0.14
RFX3P48380 POM121-201ENST00000358357 5320 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
RFX3P48380 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RFX3P48380 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RFX3P48380 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC14.2□□□□□ -0.14
RFX3P48380 HIPK1-205ENST00000369558 8157 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RFX3P48380 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC14.2□□□□□ -0.14
RFX3P48380 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
RFX3P48380 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
RFX3P48380 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RFX3P48380 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
RFX3P48380 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RFX3P48380 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC14.19□□□□□ -0.14
RFX3P48380 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC14.19□□□□□ -0.14
RFX3P48380 CACNA1G-230ENST00000514717 6699 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
RFX3P48380 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC14.19□□□□□ -0.14
RFX3P48380 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RFX3P48380 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
RFX3P48380 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC14.19□□□□□ -0.14
RFX3P48380 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
RFX3P48380 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
RFX3P48380 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RFX3P48380 AJ011931.1-201ENST00000618749 2492 ntBASIC14.19□□□□□ -0.14
RFX3P48380 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC14.19□□□□□ -0.14
RFX3P48380 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC14.19□□□□□ -0.14
RFX3P48380 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC14.19□□□□□ -0.14
RFX3P48380 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
RFX3P48380 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
RFX3P48380 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
RFX3P48380 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms