Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
RPA3P35244 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
RPA3P35244 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RPA3P35244 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RPA3P35244 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RPA3P35244 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
RPA3P35244 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
RPA3P35244 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC15.25■□□□□ 0.03
RPA3P35244 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC15.25■□□□□ 0.03
RPA3P35244 AC023090.2-201ENST00000625182 2110 ntBASIC15.25■□□□□ 0.03
RPA3P35244 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RPA3P35244 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RPA3P35244 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
RPA3P35244 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
RPA3P35244 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
RPA3P35244 ADCY7-208ENST00000566433 2535 ntTSL 5 BASIC15.24■□□□□ 0.03
RPA3P35244 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RPA3P35244 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RPA3P35244 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC15.24■□□□□ 0.03
RPA3P35244 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC15.24■□□□□ 0.03
RPA3P35244 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC15.24■□□□□ 0.03
RPA3P35244 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
RPA3P35244 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
RPA3P35244 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC15.24■□□□□ 0.03
RPA3P35244 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
RPA3P35244 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RPA3P35244 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC15.24■□□□□ 0.03
RPA3P35244 MX1-218ENST00000619682 1980 ntTSL 5 BASIC15.24■□□□□ 0.03
RPA3P35244 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RPA3P35244 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
RPA3P35244 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RPA3P35244 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
RPA3P35244 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
RPA3P35244 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
RPA3P35244 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RPA3P35244 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC15.24■□□□□ 0.03
RPA3P35244 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC15.24■□□□□ 0.03
RPA3P35244 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
RPA3P35244 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC15.24■□□□□ 0.03
RPA3P35244 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC15.24■□□□□ 0.03
RPA3P35244 AC114501.2-201ENST00000439631 535 ntBASIC15.24■□□□□ 0.03
RPA3P35244 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC15.24■□□□□ 0.03
RPA3P35244 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC15.24■□□□□ 0.03
RPA3P35244 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC15.24■□□□□ 0.03
RPA3P35244 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC15.24■□□□□ 0.03
RPA3P35244 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC15.24■□□□□ 0.03
RPA3P35244 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
RPA3P35244 LINC01115-203ENST00000606068 577 ntBASIC15.24■□□□□ 0.03
RPA3P35244 AJ011932.1-201ENST00000621707 465 ntBASIC15.24■□□□□ 0.03
RPA3P35244 AC004461.2-201ENST00000629517 803 ntBASIC15.24■□□□□ 0.03
RPA3P35244 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
RPA3P35244 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RPA3P35244 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC15.24■□□□□ 0.03
RPA3P35244 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
RPA3P35244 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RPA3P35244 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RPA3P35244 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
RPA3P35244 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
RPA3P35244 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
RPA3P35244 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RPA3P35244 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
RPA3P35244 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
RPA3P35244 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
RPA3P35244 APP-205ENST00000358918 2366 ntTSL 5 BASIC15.24■□□□□ 0.03
RPA3P35244 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC15.24■□□□□ 0.03
RPA3P35244 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RPA3P35244 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
RPA3P35244 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC15.23■□□□□ 0.03
RPA3P35244 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC15.23■□□□□ 0.03
RPA3P35244 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC15.23■□□□□ 0.03
RPA3P35244 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RPA3P35244 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RPA3P35244 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC15.23■□□□□ 0.03
RPA3P35244 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
RPA3P35244 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC15.23■□□□□ 0.03
RPA3P35244 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC15.23■□□□□ 0.03
RPA3P35244 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC15.23■□□□□ 0.03
RPA3P35244 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC15.23■□□□□ 0.03
RPA3P35244 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RPA3P35244 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RPA3P35244 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RPA3P35244 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
RPA3P35244 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RPA3P35244 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RPA3P35244 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RPA3P35244 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RPA3P35244 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RPA3P35244 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
RPA3P35244 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
RPA3P35244 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
RPA3P35244 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
RPA3P35244 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
RPA3P35244 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RPA3P35244 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
RPA3P35244 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
RPA3P35244 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC15.23■□□□□ 0.03
RPA3P35244 MRPS18AP1-201ENST00000414458 589 ntBASIC15.23■□□□□ 0.03
RPA3P35244 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC15.23■□□□□ 0.03
RPA3P35244 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC15.23■□□□□ 0.03
RPA3P35244 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms