Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 HFE2-206ENST00000634927 506 ntTSL 4 BASIC11.53□□□□□ -0.56
HLA-DMBP28068 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DMBP28068 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC11.53□□□□□ -0.56
HLA-DMBP28068 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DMBP28068 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC11.53□□□□□ -0.56
HLA-DMBP28068 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DMBP28068 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC11.53□□□□□ -0.56
HLA-DMBP28068 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DMBP28068 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DMBP28068 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DMBP28068 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC11.53□□□□□ -0.56
HLA-DMBP28068 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC11.53□□□□□ -0.56
HLA-DMBP28068 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DMBP28068 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DMBP28068 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC11.53□□□□□ -0.56
HLA-DMBP28068 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DMBP28068 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
HLA-DMBP28068 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DMBP28068 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
HLA-DMBP28068 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DMBP28068 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DMBP28068 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC11.52□□□□□ -0.56
HLA-DMBP28068 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC11.52□□□□□ -0.56
HLA-DMBP28068 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
HLA-DMBP28068 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
HLA-DMBP28068 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
HLA-DMBP28068 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
HLA-DMBP28068 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.56
HLA-DMBP28068 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.56
HLA-DMBP28068 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.56
HLA-DMBP28068 AC087386.2-201ENST00000623212 4637 ntBASIC11.52□□□□□ -0.56
HLA-DMBP28068 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
HLA-DMBP28068 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
HLA-DMBP28068 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.56
HLA-DMBP28068 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC11.52□□□□□ -0.56
HLA-DMBP28068 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC11.52□□□□□ -0.56
HLA-DMBP28068 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.56
HLA-DMBP28068 CLK3P2-201ENST00000427566 1453 ntBASIC11.52□□□□□ -0.56
HLA-DMBP28068 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
HLA-DMBP28068 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC11.52□□□□□ -0.56
HLA-DMBP28068 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC11.52□□□□□ -0.56
HLA-DMBP28068 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.56
HLA-DMBP28068 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
HLA-DMBP28068 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.57
HLA-DMBP28068 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC11.52□□□□□ -0.57
HLA-DMBP28068 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC11.52□□□□□ -0.57
HLA-DMBP28068 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC11.52□□□□□ -0.57
HLA-DMBP28068 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DMBP28068 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DMBP28068 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DMBP28068 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DMBP28068 PKIG-203ENST00000372887 769 ntTSL 3 BASIC11.52□□□□□ -0.57
HLA-DMBP28068 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC11.52□□□□□ -0.57
HLA-DMBP28068 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.57
HLA-DMBP28068 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC11.52□□□□□ -0.57
HLA-DMBP28068 TSSK5P-201ENST00000423978 907 ntBASIC11.52□□□□□ -0.57
HLA-DMBP28068 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DMBP28068 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC11.52□□□□□ -0.57
HLA-DMBP28068 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DMBP28068 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC11.52□□□□□ -0.57
HLA-DMBP28068 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC11.52□□□□□ -0.57
HLA-DMBP28068 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC11.52□□□□□ -0.57
HLA-DMBP28068 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC11.52□□□□□ -0.57
HLA-DMBP28068 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC11.52□□□□□ -0.57
HLA-DMBP28068 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC11.52□□□□□ -0.57
HLA-DMBP28068 YTHDF3-AS1-201ENST00000603538 718 ntBASIC11.52□□□□□ -0.57
HLA-DMBP28068 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DMBP28068 AC009118.2-201ENST00000613275 655 ntBASIC11.52□□□□□ -0.57
HLA-DMBP28068 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC11.52□□□□□ -0.57
HLA-DMBP28068 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC11.52□□□□□ -0.57
HLA-DMBP28068 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DMBP28068 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DMBP28068 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC11.52□□□□□ -0.57
HLA-DMBP28068 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DMBP28068 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC11.52□□□□□ -0.57
HLA-DMBP28068 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC11.52□□□□□ -0.57
HLA-DMBP28068 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DMBP28068 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC11.52□□□□□ -0.57
HLA-DMBP28068 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.57
HLA-DMBP28068 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DMBP28068 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DMBP28068 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DMBP28068 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DMBP28068 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DMBP28068 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC11.52□□□□□ -0.57
HLA-DMBP28068 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DMBP28068 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.57
HLA-DMBP28068 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
HLA-DMBP28068 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
HLA-DMBP28068 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
HLA-DMBP28068 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
HLA-DMBP28068 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC11.51□□□□□ -0.57
HLA-DMBP28068 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
HLA-DMBP28068 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC11.51□□□□□ -0.57
HLA-DMBP28068 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC11.51□□□□□ -0.57
HLA-DMBP28068 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
HLA-DMBP28068 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC11.51□□□□□ -0.57
HLA-DMBP28068 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC11.51□□□□□ -0.57
HLA-DMBP28068 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
HLA-DMBP28068 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC11.51□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms