Protein–RNA interactions for Protein: P0C091

FREM3, FRAS1-related extracellular matrix protein 3, humanhuman

Predictions only

Length 2,139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FREM3P0C091 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
FREM3P0C091 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
FREM3P0C091 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
FREM3P0C091 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
FREM3P0C091 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
FREM3P0C091 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
FREM3P0C091 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
FREM3P0C091 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
FREM3P0C091 CICP14-201ENST00000629111 2732 ntBASIC13.63□□□□□ -0.23
FREM3P0C091 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC13.63□□□□□ -0.23
FREM3P0C091 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
FREM3P0C091 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
FREM3P0C091 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
FREM3P0C091 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC13.63□□□□□ -0.23
FREM3P0C091 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC13.63□□□□□ -0.23
FREM3P0C091 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC13.63□□□□□ -0.23
FREM3P0C091 ENPP7P14-201ENST00000621765 1040 ntBASIC13.63□□□□□ -0.23
FREM3P0C091 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC13.63□□□□□ -0.23
FREM3P0C091 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
FREM3P0C091 AL390755.1-201ENST00000623716 2027 ntBASIC13.63□□□□□ -0.23
FREM3P0C091 AC012508.2-201ENST00000567613 1472 ntBASIC13.63□□□□□ -0.23
FREM3P0C091 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
FREM3P0C091 AC009093.2-202ENST00000620513 2079 ntBASIC13.63□□□□□ -0.23
FREM3P0C091 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
FREM3P0C091 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC13.63□□□□□ -0.23
FREM3P0C091 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC13.63□□□□□ -0.23
FREM3P0C091 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
FREM3P0C091 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC13.63□□□□□ -0.23
FREM3P0C091 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC13.63□□□□□ -0.23
FREM3P0C091 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
FREM3P0C091 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
FREM3P0C091 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC13.63□□□□□ -0.23
FREM3P0C091 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
FREM3P0C091 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
FREM3P0C091 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
FREM3P0C091 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC13.63□□□□□ -0.23
FREM3P0C091 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
FREM3P0C091 AC243960.2-201ENST00000600996 747 ntBASIC13.63□□□□□ -0.23
FREM3P0C091 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC13.63□□□□□ -0.23
FREM3P0C091 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
FREM3P0C091 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.23
FREM3P0C091 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
FREM3P0C091 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC13.62□□□□□ -0.23
FREM3P0C091 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.23
FREM3P0C091 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
FREM3P0C091 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
FREM3P0C091 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
FREM3P0C091 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC13.62□□□□□ -0.23
FREM3P0C091 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC13.62□□□□□ -0.23
FREM3P0C091 INTS4P1-203ENST00000641008 3683 ntBASIC13.62□□□□□ -0.23
FREM3P0C091 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
FREM3P0C091 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
FREM3P0C091 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC13.62□□□□□ -0.23
FREM3P0C091 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC13.62□□□□□ -0.23
FREM3P0C091 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC13.62□□□□□ -0.23
FREM3P0C091 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
FREM3P0C091 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
FREM3P0C091 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
FREM3P0C091 SERF2-209ENST00000409646 559 ntTSL 4 BASIC13.62□□□□□ -0.23
FREM3P0C091 HIST2H2BB-201ENST00000449108 381 ntBASIC13.62□□□□□ -0.23
FREM3P0C091 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
FREM3P0C091 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
FREM3P0C091 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
FREM3P0C091 PACS1-203ENST00000524815 628 ntTSL 4 BASIC13.62□□□□□ -0.23
FREM3P0C091 AGER-214ENST00000538695 487 ntTSL 2 BASIC13.62□□□□□ -0.23
FREM3P0C091 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
FREM3P0C091 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
FREM3P0C091 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
FREM3P0C091 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
FREM3P0C091 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC13.62□□□□□ -0.23
FREM3P0C091 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
FREM3P0C091 AC097359.2-201ENST00000604992 2389 ntBASIC13.62□□□□□ -0.23
FREM3P0C091 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC13.62□□□□□ -0.23
FREM3P0C091 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
FREM3P0C091 AC018529.2-202ENST00000611482 3087 ntBASIC13.62□□□□□ -0.23
FREM3P0C091 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
FREM3P0C091 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
FREM3P0C091 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
FREM3P0C091 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
FREM3P0C091 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
FREM3P0C091 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
FREM3P0C091 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC13.62□□□□□ -0.23
FREM3P0C091 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
FREM3P0C091 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
FREM3P0C091 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
FREM3P0C091 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
FREM3P0C091 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC13.62□□□□□ -0.23
FREM3P0C091 AL137783.1-201ENST00000623494 1896 ntBASIC13.62□□□□□ -0.23
FREM3P0C091 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC13.61□□□□□ -0.23
FREM3P0C091 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
FREM3P0C091 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
FREM3P0C091 AL138725.1-201ENST00000407347 1314 ntBASIC13.61□□□□□ -0.23
FREM3P0C091 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
FREM3P0C091 RPS15-201ENST00000233609 534 ntTSL 2 BASIC13.61□□□□□ -0.23
FREM3P0C091 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
FREM3P0C091 TPM3P8-201ENST00000330554 643 ntBASIC13.61□□□□□ -0.23
FREM3P0C091 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
FREM3P0C091 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
FREM3P0C091 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
FREM3P0C091 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC13.61□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms