Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DOAP06340 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC17.59■□□□□ 0.41
HLA-DOAP06340 CELP-203ENST00000624767 2414 ntTSL 5 BASIC17.59■□□□□ 0.41
HLA-DOAP06340 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC17.59■□□□□ 0.41
HLA-DOAP06340 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DOAP06340 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC17.59■□□□□ 0.41
HLA-DOAP06340 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC17.59■□□□□ 0.41
HLA-DOAP06340 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DOAP06340 ZBED1P1-201ENST00000502364 1930 ntBASIC17.59■□□□□ 0.41
HLA-DOAP06340 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC17.59■□□□□ 0.41
HLA-DOAP06340 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DOAP06340 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DOAP06340 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DOAP06340 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DOAP06340 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DOAP06340 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC17.59■□□□□ 0.41
HLA-DOAP06340 PUDPP3-201ENST00000445368 636 ntBASIC17.59■□□□□ 0.41
HLA-DOAP06340 AL133466.1-201ENST00000447582 150 ntBASIC17.59■□□□□ 0.41
HLA-DOAP06340 TSACC-208ENST00000481479 741 ntTSL 2 BASIC17.59■□□□□ 0.41
HLA-DOAP06340 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC17.59■□□□□ 0.41
HLA-DOAP06340 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC17.59■□□□□ 0.41
HLA-DOAP06340 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC17.59■□□□□ 0.41
HLA-DOAP06340 RN7SL774P-201ENST00000577467 290 ntBASIC17.59■□□□□ 0.41
HLA-DOAP06340 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
HLA-DOAP06340 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC17.59■□□□□ 0.41
HLA-DOAP06340 AC027601.3-201ENST00000622907 509 ntBASIC17.59■□□□□ 0.41
HLA-DOAP06340 AL805961.1-203ENST00000641078 1258 ntBASIC17.59■□□□□ 0.41
HLA-DOAP06340 AC138035.3-201ENST00000622706 2791 ntBASIC17.59■□□□□ 0.41
HLA-DOAP06340 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DOAP06340 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DOAP06340 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DOAP06340 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DOAP06340 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC17.59■□□□□ 0.41
HLA-DOAP06340 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DOAP06340 CASK-202ENST00000378158 3848 ntTSL 5 BASIC17.59■□□□□ 0.41
HLA-DOAP06340 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC17.59■□□□□ 0.41
HLA-DOAP06340 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DOAP06340 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC17.59■□□□□ 0.41
HLA-DOAP06340 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DOAP06340 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DOAP06340 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DOAP06340 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC17.58■□□□□ 0.41
HLA-DOAP06340 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
HLA-DOAP06340 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
HLA-DOAP06340 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
HLA-DOAP06340 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
HLA-DOAP06340 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC17.58■□□□□ 0.41
HLA-DOAP06340 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HLA-DOAP06340 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC17.58■□□□□ 0.4
HLA-DOAP06340 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HLA-DOAP06340 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
HLA-DOAP06340 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HLA-DOAP06340 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HLA-DOAP06340 AL035414.1-201ENST00000451327 857 ntBASIC17.58■□□□□ 0.4
HLA-DOAP06340 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HLA-DOAP06340 UPF3AP2-201ENST00000457924 1132 ntBASIC17.58■□□□□ 0.4
HLA-DOAP06340 AC008805.1-201ENST00000590892 364 ntBASIC17.58■□□□□ 0.4
HLA-DOAP06340 MIR6720-201ENST00000611664 98 ntBASIC17.58■□□□□ 0.4
HLA-DOAP06340 AP000346.4-201ENST00000614827 381 ntBASIC17.58■□□□□ 0.4
HLA-DOAP06340 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC17.58■□□□□ 0.4
HLA-DOAP06340 RPL35-206ENST00000629845 340 ntTSL 5 BASIC17.58■□□□□ 0.4
HLA-DOAP06340 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC17.58■□□□□ 0.4
HLA-DOAP06340 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HLA-DOAP06340 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HLA-DOAP06340 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HLA-DOAP06340 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HLA-DOAP06340 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC17.58■□□□□ 0.4
HLA-DOAP06340 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC17.58■□□□□ 0.4
HLA-DOAP06340 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
HLA-DOAP06340 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
HLA-DOAP06340 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
HLA-DOAP06340 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DOAP06340 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC17.57■□□□□ 0.4
HLA-DOAP06340 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DOAP06340 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
HLA-DOAP06340 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC17.57■□□□□ 0.4
HLA-DOAP06340 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
HLA-DOAP06340 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DOAP06340 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DOAP06340 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC17.57■□□□□ 0.4
HLA-DOAP06340 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DOAP06340 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC17.57■□□□□ 0.4
HLA-DOAP06340 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DOAP06340 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DOAP06340 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DOAP06340 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DOAP06340 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC17.57■□□□□ 0.4
HLA-DOAP06340 SLC16A6P1-201ENST00000413214 1059 ntBASIC17.57■□□□□ 0.4
HLA-DOAP06340 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC17.57■□□□□ 0.4
HLA-DOAP06340 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DOAP06340 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC17.57■□□□□ 0.4
HLA-DOAP06340 CICP12-201ENST00000455801 843 ntBASIC17.57■□□□□ 0.4
HLA-DOAP06340 AC245884.6-201ENST00000515672 1067 ntBASIC17.57■□□□□ 0.4
HLA-DOAP06340 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
HLA-DOAP06340 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC17.57■□□□□ 0.4
HLA-DOAP06340 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC17.57■□□□□ 0.4
HLA-DOAP06340 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC17.57■□□□□ 0.4
HLA-DOAP06340 AC091812.3-201ENST00000621362 345 ntBASIC17.57■□□□□ 0.4
HLA-DOAP06340 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC17.57■□□□□ 0.4
HLA-DOAP06340 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms