Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
MSH4O15457 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC16.78■□□□□ 0.28
MSH4O15457 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC16.78■□□□□ 0.28
MSH4O15457 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC16.78■□□□□ 0.28
MSH4O15457 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
MSH4O15457 AC091271.1-201ENST00000611877 1162 ntBASIC16.78■□□□□ 0.28
MSH4O15457 AC005695.3-201ENST00000614522 232 ntBASIC16.78■□□□□ 0.28
MSH4O15457 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC16.78■□□□□ 0.28
MSH4O15457 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
MSH4O15457 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
MSH4O15457 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
MSH4O15457 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MSH4O15457 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
MSH4O15457 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MSH4O15457 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC16.78■□□□□ 0.28
MSH4O15457 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
MSH4O15457 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
MSH4O15457 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MSH4O15457 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
MSH4O15457 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
MSH4O15457 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
MSH4O15457 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC16.77■□□□□ 0.28
MSH4O15457 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
MSH4O15457 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
MSH4O15457 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
MSH4O15457 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
MSH4O15457 MX1-218ENST00000619682 1980 ntTSL 5 BASIC16.77■□□□□ 0.28
MSH4O15457 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
MSH4O15457 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
MSH4O15457 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
MSH4O15457 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC16.77■□□□□ 0.28
MSH4O15457 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
MSH4O15457 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
MSH4O15457 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC16.77■□□□□ 0.28
MSH4O15457 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC16.77■□□□□ 0.28
MSH4O15457 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
MSH4O15457 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
MSH4O15457 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC16.77■□□□□ 0.28
MSH4O15457 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
MSH4O15457 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC16.77■□□□□ 0.28
MSH4O15457 RN7SL219P-201ENST00000582872 296 ntBASIC16.77■□□□□ 0.28
MSH4O15457 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
MSH4O15457 PRKN-211ENST00000615065 261 ntTSL 5 BASIC16.77■□□□□ 0.28
MSH4O15457 NID2-208ENST00000617139 3827 ntTSL 5 BASIC16.77■□□□□ 0.28
MSH4O15457 MIR6799-201ENST00000620297 69 ntBASIC16.77■□□□□ 0.28
MSH4O15457 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC16.77■□□□□ 0.28
MSH4O15457 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.27
MSH4O15457 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
MSH4O15457 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
MSH4O15457 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC16.77■□□□□ 0.27
MSH4O15457 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
MSH4O15457 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
MSH4O15457 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC16.77■□□□□ 0.27
MSH4O15457 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
MSH4O15457 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
MSH4O15457 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
MSH4O15457 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
MSH4O15457 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSH4O15457 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSH4O15457 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC16.76■□□□□ 0.27
MSH4O15457 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSH4O15457 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
MSH4O15457 SHC1P1-201ENST00000425230 1745 ntBASIC16.76■□□□□ 0.27
MSH4O15457 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSH4O15457 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSH4O15457 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSH4O15457 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
MSH4O15457 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSH4O15457 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSH4O15457 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
MSH4O15457 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSH4O15457 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
MSH4O15457 MIR663B-201ENST00000408361 115 ntBASIC16.76■□□□□ 0.27
MSH4O15457 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC16.76■□□□□ 0.27
MSH4O15457 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC16.76■□□□□ 0.27
MSH4O15457 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
MSH4O15457 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC16.76■□□□□ 0.27
MSH4O15457 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC16.76■□□□□ 0.27
MSH4O15457 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC16.76■□□□□ 0.27
MSH4O15457 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC16.76■□□□□ 0.27
MSH4O15457 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC16.76■□□□□ 0.27
MSH4O15457 ABBA01031663.1-201ENST00000635630 790 ntBASIC16.76■□□□□ 0.27
MSH4O15457 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSH4O15457 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSH4O15457 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
MSH4O15457 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSH4O15457 E2F3P2-201ENST00000447755 1422 ntBASIC16.76■□□□□ 0.27
MSH4O15457 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
MSH4O15457 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSH4O15457 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC16.76■□□□□ 0.27
MSH4O15457 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC16.76■□□□□ 0.27
MSH4O15457 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSH4O15457 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC16.76■□□□□ 0.27
MSH4O15457 AL136172.1-201ENST00000598590 1394 ntBASIC16.76■□□□□ 0.27
MSH4O15457 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC16.75■□□□□ 0.27
MSH4O15457 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC16.75■□□□□ 0.27
MSH4O15457 MRPL37P1-201ENST00000592451 1337 ntBASIC16.75■□□□□ 0.27
MSH4O15457 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC16.75■□□□□ 0.27
MSH4O15457 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
MSH4O15457 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms