Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
NPHP1O15259 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
NPHP1O15259 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
NPHP1O15259 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC18.93■□□□□ 0.62
NPHP1O15259 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
NPHP1O15259 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC18.93■□□□□ 0.62
NPHP1O15259 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC18.93■□□□□ 0.62
NPHP1O15259 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC18.93■□□□□ 0.62
NPHP1O15259 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
NPHP1O15259 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC18.93■□□□□ 0.62
NPHP1O15259 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
NPHP1O15259 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
NPHP1O15259 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
NPHP1O15259 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC18.93■□□□□ 0.62
NPHP1O15259 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
NPHP1O15259 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
NPHP1O15259 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
NPHP1O15259 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC18.93■□□□□ 0.62
NPHP1O15259 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
NPHP1O15259 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
NPHP1O15259 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
NPHP1O15259 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
NPHP1O15259 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
NPHP1O15259 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
NPHP1O15259 AC104457.1-201ENST00000401024 814 ntBASIC18.93■□□□□ 0.62
NPHP1O15259 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC18.93■□□□□ 0.62
NPHP1O15259 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC18.93■□□□□ 0.62
NPHP1O15259 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
NPHP1O15259 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC18.93■□□□□ 0.62
NPHP1O15259 AL161670.2-201ENST00000557650 1227 ntBASIC18.93■□□□□ 0.62
NPHP1O15259 CENPX-208ENST00000584347 799 ntTSL 2 BASIC18.93■□□□□ 0.62
NPHP1O15259 AC002472.3-201ENST00000640124 621 ntBASIC18.93■□□□□ 0.62
NPHP1O15259 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC18.93■□□□□ 0.62
NPHP1O15259 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
NPHP1O15259 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
NPHP1O15259 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC18.93■□□□□ 0.62
NPHP1O15259 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
NPHP1O15259 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
NPHP1O15259 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
NPHP1O15259 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC18.93■□□□□ 0.62
NPHP1O15259 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
NPHP1O15259 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
NPHP1O15259 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC18.93■□□□□ 0.62
NPHP1O15259 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
NPHP1O15259 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
NPHP1O15259 AC007950.2-201ENST00000615045 2347 ntBASIC18.92■□□□□ 0.62
NPHP1O15259 PES1-204ENST00000402284 2144 ntTSL 5 BASIC18.92■□□□□ 0.62
NPHP1O15259 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
NPHP1O15259 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
NPHP1O15259 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
NPHP1O15259 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
NPHP1O15259 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
NPHP1O15259 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
NPHP1O15259 AC023824.1-201ENST00000562945 2975 ntBASIC18.92■□□□□ 0.62
NPHP1O15259 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC18.92■□□□□ 0.62
NPHP1O15259 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC18.92■□□□□ 0.62
NPHP1O15259 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
NPHP1O15259 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
NPHP1O15259 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
NPHP1O15259 NPPA-201ENST00000376476 728 ntTSL 3 BASIC18.92■□□□□ 0.62
NPHP1O15259 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
NPHP1O15259 MPV17-204ENST00000399052 749 ntTSL 4 BASIC18.92■□□□□ 0.62
NPHP1O15259 RPL5P21-201ENST00000404620 815 ntBASIC18.92■□□□□ 0.62
NPHP1O15259 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC18.92■□□□□ 0.62
NPHP1O15259 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC18.92■□□□□ 0.62
NPHP1O15259 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC18.92■□□□□ 0.62
NPHP1O15259 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
NPHP1O15259 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC18.92■□□□□ 0.62
NPHP1O15259 NAT9-224ENST00000583757 583 ntTSL 3 BASIC18.92■□□□□ 0.62
NPHP1O15259 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC18.92■□□□□ 0.62
NPHP1O15259 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
NPHP1O15259 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
NPHP1O15259 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
NPHP1O15259 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC18.92■□□□□ 0.62
NPHP1O15259 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
NPHP1O15259 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
NPHP1O15259 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC18.92■□□□□ 0.62
NPHP1O15259 ACE-203ENST00000413513 2237 ntTSL 2 BASIC18.92■□□□□ 0.62
NPHP1O15259 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
NPHP1O15259 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC18.91■□□□□ 0.62
NPHP1O15259 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
NPHP1O15259 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC18.91■□□□□ 0.62
NPHP1O15259 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
NPHP1O15259 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC18.91■□□□□ 0.62
NPHP1O15259 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC18.91■□□□□ 0.62
NPHP1O15259 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
NPHP1O15259 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
NPHP1O15259 AC112504.1-201ENST00000623415 1841 ntBASIC18.91■□□□□ 0.62
NPHP1O15259 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
NPHP1O15259 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC18.91■□□□□ 0.62
NPHP1O15259 CICP13-201ENST00000422015 2789 ntBASIC18.91■□□□□ 0.62
NPHP1O15259 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
NPHP1O15259 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
NPHP1O15259 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
NPHP1O15259 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
NPHP1O15259 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC18.91■□□□□ 0.62
NPHP1O15259 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
NPHP1O15259 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC18.91■□□□□ 0.62
NPHP1O15259 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC18.91■□□□□ 0.62
NPHP1O15259 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 73.8 ms