Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC13.62□□□□□ -0.23
HIF3AQ9Y2N7 DUX4L47-201ENST00000566374 394 ntBASIC13.62□□□□□ -0.23
HIF3AQ9Y2N7 NAA60-208ENST00000570819 833 ntTSL 2 BASIC13.62□□□□□ -0.23
HIF3AQ9Y2N7 RPS15-202ENST00000585665 467 ntTSL 3 BASIC13.62□□□□□ -0.23
HIF3AQ9Y2N7 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
HIF3AQ9Y2N7 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC13.62□□□□□ -0.23
HIF3AQ9Y2N7 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
HIF3AQ9Y2N7 AC093726.1-201ENST00000608064 963 ntBASIC13.62□□□□□ -0.23
HIF3AQ9Y2N7 GPALPP1-207ENST00000611650 899 ntBASIC13.62□□□□□ -0.23
HIF3AQ9Y2N7 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
HIF3AQ9Y2N7 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
HIF3AQ9Y2N7 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC13.62□□□□□ -0.23
HIF3AQ9Y2N7 NUDT3-201ENST00000607016 9905 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HIF3AQ9Y2N7 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HIF3AQ9Y2N7 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC13.62□□□□□ -0.23
HIF3AQ9Y2N7 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HIF3AQ9Y2N7 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
HIF3AQ9Y2N7 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
HIF3AQ9Y2N7 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC13.62□□□□□ -0.23
HIF3AQ9Y2N7 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HIF3AQ9Y2N7 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
HIF3AQ9Y2N7 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HIF3AQ9Y2N7 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
HIF3AQ9Y2N7 MYLK-203ENST00000359169 7585 ntAPPRIS P3 TSL 5 BASIC13.62□□□□□ -0.23
HIF3AQ9Y2N7 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC13.62□□□□□ -0.23
HIF3AQ9Y2N7 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HIF3AQ9Y2N7 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC13.62□□□□□ -0.23
HIF3AQ9Y2N7 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
HIF3AQ9Y2N7 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC13.62□□□□□ -0.23
HIF3AQ9Y2N7 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC13.62□□□□□ -0.23
HIF3AQ9Y2N7 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HIF3AQ9Y2N7 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HIF3AQ9Y2N7 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
HIF3AQ9Y2N7 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HIF3AQ9Y2N7 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC13.61□□□□□ -0.23
HIF3AQ9Y2N7 PHLDB2-204ENST00000431670 6127 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HIF3AQ9Y2N7 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HIF3AQ9Y2N7 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HIF3AQ9Y2N7 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HIF3AQ9Y2N7 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HIF3AQ9Y2N7 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HIF3AQ9Y2N7 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HIF3AQ9Y2N7 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HIF3AQ9Y2N7 AP001267.2-201ENST00000532619 2086 ntBASIC13.61□□□□□ -0.23
HIF3AQ9Y2N7 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HIF3AQ9Y2N7 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HIF3AQ9Y2N7 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
HIF3AQ9Y2N7 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
HIF3AQ9Y2N7 B9D1-203ENST00000395615 805 ntTSL 3 BASIC13.61□□□□□ -0.23
HIF3AQ9Y2N7 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
HIF3AQ9Y2N7 C1QBPP1-201ENST00000400117 770 ntBASIC13.61□□□□□ -0.23
HIF3AQ9Y2N7 PMS2P2-201ENST00000425039 1128 ntBASIC13.61□□□□□ -0.23
HIF3AQ9Y2N7 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC13.61□□□□□ -0.23
HIF3AQ9Y2N7 TPT1P11-201ENST00000458482 498 ntBASIC13.61□□□□□ -0.23
HIF3AQ9Y2N7 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC13.61□□□□□ -0.23
HIF3AQ9Y2N7 AC092183.1-201ENST00000469884 875 ntBASIC13.61□□□□□ -0.23
HIF3AQ9Y2N7 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
HIF3AQ9Y2N7 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
HIF3AQ9Y2N7 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC13.61□□□□□ -0.23
HIF3AQ9Y2N7 AL035078.1-201ENST00000531962 820 ntTSL 5 BASIC13.61□□□□□ -0.23
HIF3AQ9Y2N7 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC13.61□□□□□ -0.23
HIF3AQ9Y2N7 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC13.61□□□□□ -0.23
HIF3AQ9Y2N7 AC124283.3-201ENST00000570869 594 ntBASIC13.61□□□□□ -0.23
HIF3AQ9Y2N7 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
HIF3AQ9Y2N7 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC13.61□□□□□ -0.23
HIF3AQ9Y2N7 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC13.61□□□□□ -0.23
HIF3AQ9Y2N7 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HIF3AQ9Y2N7 AC009118.2-201ENST00000613275 655 ntBASIC13.61□□□□□ -0.23
HIF3AQ9Y2N7 MIR8072-201ENST00000614241 80 ntBASIC13.61□□□□□ -0.23
HIF3AQ9Y2N7 LINC02536-201ENST00000625799 625 ntTSL 3 BASIC13.61□□□□□ -0.23
HIF3AQ9Y2N7 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HIF3AQ9Y2N7 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
HIF3AQ9Y2N7 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HIF3AQ9Y2N7 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
HIF3AQ9Y2N7 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
HIF3AQ9Y2N7 KRT8P22-201ENST00000562317 1415 ntBASIC13.61□□□□□ -0.23
HIF3AQ9Y2N7 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC13.61□□□□□ -0.23
HIF3AQ9Y2N7 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
HIF3AQ9Y2N7 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC13.61□□□□□ -0.23
HIF3AQ9Y2N7 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
HIF3AQ9Y2N7 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
HIF3AQ9Y2N7 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
HIF3AQ9Y2N7 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC13.61□□□□□ -0.23
HIF3AQ9Y2N7 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
HIF3AQ9Y2N7 GGCT-205ENST00000409436 954 ntTSL 3 BASIC13.6□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms