Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AC018442.1-201ENST00000421439 2061 ntBASIC15.08■□□□□ 0.01
VPS9D1Q9Y2B5 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
VPS9D1Q9Y2B5 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0.01
VPS9D1Q9Y2B5 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC15.08■□□□□ 0.01
VPS9D1Q9Y2B5 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
VPS9D1Q9Y2B5 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0.01
VPS9D1Q9Y2B5 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0.01
VPS9D1Q9Y2B5 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
VPS9D1Q9Y2B5 AL137783.1-201ENST00000623494 1896 ntBASIC15.08■□□□□ 0.01
VPS9D1Q9Y2B5 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
VPS9D1Q9Y2B5 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC15.08■□□□□ 0
VPS9D1Q9Y2B5 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC15.08■□□□□ 0
VPS9D1Q9Y2B5 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC15.08■□□□□ 0
VPS9D1Q9Y2B5 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0
VPS9D1Q9Y2B5 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
VPS9D1Q9Y2B5 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC15.08■□□□□ 0
VPS9D1Q9Y2B5 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
VPS9D1Q9Y2B5 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC15.08■□□□□ 0
VPS9D1Q9Y2B5 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
VPS9D1Q9Y2B5 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
VPS9D1Q9Y2B5 AL162726.2-201ENST00000438986 1017 ntBASIC15.08■□□□□ 0
VPS9D1Q9Y2B5 AL353718.1-201ENST00000451028 517 ntBASIC15.08■□□□□ 0
VPS9D1Q9Y2B5 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC15.08■□□□□ 0
VPS9D1Q9Y2B5 AP001582.1-201ENST00000525856 295 ntBASIC15.08■□□□□ 0
VPS9D1Q9Y2B5 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC15.08■□□□□ 0
VPS9D1Q9Y2B5 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC15.08■□□□□ 0
VPS9D1Q9Y2B5 SPCS2P1-201ENST00000561636 679 ntBASIC15.08■□□□□ 0
VPS9D1Q9Y2B5 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC15.08■□□□□ 0
VPS9D1Q9Y2B5 LINC02560-201ENST00000596379 459 ntBASIC15.08■□□□□ 0
VPS9D1Q9Y2B5 AC003956.1-201ENST00000598450 356 ntTSL 3 BASIC15.08■□□□□ 0
VPS9D1Q9Y2B5 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
VPS9D1Q9Y2B5 MIR8072-201ENST00000614241 80 ntBASIC15.08■□□□□ 0
VPS9D1Q9Y2B5 AP005019.2-201ENST00000615104 511 ntBASIC15.08■□□□□ 0
VPS9D1Q9Y2B5 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
VPS9D1Q9Y2B5 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC15.08■□□□□ 0
VPS9D1Q9Y2B5 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
VPS9D1Q9Y2B5 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC15.08■□□□□ 0
VPS9D1Q9Y2B5 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
VPS9D1Q9Y2B5 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC15.08■□□□□ 0
VPS9D1Q9Y2B5 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC15.08■□□□□ 0
VPS9D1Q9Y2B5 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC15.08■□□□□ 0
VPS9D1Q9Y2B5 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 COA1-202ENST00000310564 1085 ntAPPRIS P3 TSL 2 BASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 ACKR1-201ENST00000368121 1240 ntBASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 BRF1-202ENST00000379932 884 ntTSL 5 BASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 STATH-202ENST00000381060 534 ntTSL 1 (best) BASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 PIN1P1-201ENST00000412108 996 ntBASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 DPYD-AS2-201ENST00000422259 788 ntTSL 3 BASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 BCRP1-201ENST00000444246 691 ntBASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 USP9YP2-201ENST00000504503 1000 ntBASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 USP9YP1-201ENST00000513521 1002 ntBASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 AL359711.2-201ENST00000563105 872 ntBASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 AC112220.4-201ENST00000604982 1263 ntBASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 Metazoa_SRP.91-201ENST00000622745 281 ntBASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 METTL15-211ENST00000634762 718 ntTSL 5 BASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 C1R-202ENST00000536053 2347 ntTSL 2 BASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 CTBP1-AS2-206ENST00000581398 5652 ntBASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 AC018665.1-201ENST00000622927 1362 ntBASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
VPS9D1Q9Y2B5 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC15.07■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 88.3 ms