Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
SSU72Q9NP77 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SSU72Q9NP77 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SSU72Q9NP77 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SSU72Q9NP77 ADAM17-204ENST00000618923 1881 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SSU72Q9NP77 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SSU72Q9NP77 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
SSU72Q9NP77 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
SSU72Q9NP77 CPT1B-202ENST00000360719 2319 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
SSU72Q9NP77 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SSU72Q9NP77 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
SSU72Q9NP77 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SSU72Q9NP77 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
SSU72Q9NP77 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC14.91□□□□□ -0.02
SSU72Q9NP77 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
SSU72Q9NP77 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC14.91□□□□□ -0.02
SSU72Q9NP77 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SSU72Q9NP77 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC14.91□□□□□ -0.02
SSU72Q9NP77 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC14.91□□□□□ -0.02
SSU72Q9NP77 AP000344.2-201ENST00000512987 629 ntBASIC14.91□□□□□ -0.02
SSU72Q9NP77 PGAM5P1-201ENST00000518923 814 ntBASIC14.91□□□□□ -0.02
SSU72Q9NP77 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC14.91□□□□□ -0.02
SSU72Q9NP77 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC14.91□□□□□ -0.02
SSU72Q9NP77 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC14.91□□□□□ -0.02
SSU72Q9NP77 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
SSU72Q9NP77 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SSU72Q9NP77 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC14.91□□□□□ -0.02
SSU72Q9NP77 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC14.91□□□□□ -0.02
SSU72Q9NP77 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
SSU72Q9NP77 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC14.91□□□□□ -0.02
SSU72Q9NP77 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC14.91□□□□□ -0.02
SSU72Q9NP77 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
SSU72Q9NP77 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
SSU72Q9NP77 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SSU72Q9NP77 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SSU72Q9NP77 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC14.91□□□□□ -0.02
SSU72Q9NP77 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
SSU72Q9NP77 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
SSU72Q9NP77 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
SSU72Q9NP77 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SSU72Q9NP77 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SSU72Q9NP77 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SSU72Q9NP77 AC099521.3-201ENST00000624251 2938 ntBASIC14.9□□□□□ -0.02
SSU72Q9NP77 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC14.9□□□□□ -0.02
SSU72Q9NP77 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SSU72Q9NP77 LINC01725-203ENST00000417975 3177 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SSU72Q9NP77 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SSU72Q9NP77 SLC23A1-201ENST00000348729 2299 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SSU72Q9NP77 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC14.9□□□□□ -0.02
SSU72Q9NP77 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SSU72Q9NP77 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SSU72Q9NP77 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC14.9□□□□□ -0.02
SSU72Q9NP77 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SSU72Q9NP77 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
SSU72Q9NP77 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
SSU72Q9NP77 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SSU72Q9NP77 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SSU72Q9NP77 HPD-204ENST00000543163 1709 ntTSL 5 BASIC14.9□□□□□ -0.02
SSU72Q9NP77 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
SSU72Q9NP77 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SSU72Q9NP77 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC14.9□□□□□ -0.02
SSU72Q9NP77 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SSU72Q9NP77 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SSU72Q9NP77 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SSU72Q9NP77 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SSU72Q9NP77 TEX30-205ENST00000376029 959 ntTSL 2 BASIC14.9□□□□□ -0.02
SSU72Q9NP77 TLE1P1-201ENST00000422965 589 ntBASIC14.9□□□□□ -0.02
SSU72Q9NP77 NUS1P3-201ENST00000423502 862 ntBASIC14.9□□□□□ -0.02
SSU72Q9NP77 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
SSU72Q9NP77 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SSU72Q9NP77 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC14.9□□□□□ -0.02
SSU72Q9NP77 AL512356.2-201ENST00000546955 174 ntBASIC14.9□□□□□ -0.02
SSU72Q9NP77 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
SSU72Q9NP77 AC120114.3-201ENST00000611923 658 ntBASIC14.9□□□□□ -0.02
SSU72Q9NP77 TEX28P1-201ENST00000613479 1221 ntBASIC14.9□□□□□ -0.02
SSU72Q9NP77 TEX28P2-201ENST00000617764 1221 ntBASIC14.9□□□□□ -0.02
SSU72Q9NP77 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC14.9□□□□□ -0.02
SSU72Q9NP77 PRSS30P-206ENST00000641773 873 ntBASIC14.9□□□□□ -0.02
SSU72Q9NP77 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SSU72Q9NP77 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SSU72Q9NP77 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SSU72Q9NP77 LDB3-209ENST00000623056 2314 ntTSL 5 BASIC14.9□□□□□ -0.02
SSU72Q9NP77 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SSU72Q9NP77 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SSU72Q9NP77 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC14.9□□□□□ -0.02
SSU72Q9NP77 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC14.9□□□□□ -0.02
SSU72Q9NP77 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SSU72Q9NP77 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SSU72Q9NP77 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SSU72Q9NP77 FOS-202ENST00000535987 1402 ntTSL 2 BASIC14.9□□□□□ -0.02
SSU72Q9NP77 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
SSU72Q9NP77 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC14.9□□□□□ -0.02
SSU72Q9NP77 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC14.9□□□□□ -0.02
SSU72Q9NP77 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC14.9□□□□□ -0.02
SSU72Q9NP77 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
SSU72Q9NP77 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SSU72Q9NP77 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SSU72Q9NP77 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SSU72Q9NP77 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SSU72Q9NP77 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms