Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 LAP3P2-201ENST00000454686 1454 ntBASIC18.8■□□□□ 0.6
SHANK3Q9BYB0 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC18.8■□□□□ 0.6
SHANK3Q9BYB0 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC18.8■□□□□ 0.6
SHANK3Q9BYB0 ALG11-203ENST00000523764 1404 ntTSL 2 BASIC18.8■□□□□ 0.6
SHANK3Q9BYB0 TXNDC9-201ENST00000264255 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SHANK3Q9BYB0 AC015688.4-201ENST00000580780 1647 ntBASIC18.8■□□□□ 0.6
SHANK3Q9BYB0 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC18.8■□□□□ 0.6
SHANK3Q9BYB0 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
SHANK3Q9BYB0 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SHANK3Q9BYB0 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
SHANK3Q9BYB0 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC18.8■□□□□ 0.6
SHANK3Q9BYB0 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC18.8■□□□□ 0.6
SHANK3Q9BYB0 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
SHANK3Q9BYB0 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SHANK3Q9BYB0 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SHANK3Q9BYB0 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC18.8■□□□□ 0.6
SHANK3Q9BYB0 DNMT3L-204ENST00000628202 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SHANK3Q9BYB0 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
SHANK3Q9BYB0 TEKT4P2-202ENST00000559466 1312 ntBASIC18.8■□□□□ 0.6
SHANK3Q9BYB0 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SHANK3Q9BYB0 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SHANK3Q9BYB0 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC18.8■□□□□ 0.6
SHANK3Q9BYB0 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC18.8■□□□□ 0.6
SHANK3Q9BYB0 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC18.8■□□□□ 0.6
SHANK3Q9BYB0 AGPAT5P1-201ENST00000455855 1019 ntBASIC18.8■□□□□ 0.6
SHANK3Q9BYB0 AC024293.1-201ENST00000467930 498 ntBASIC18.8■□□□□ 0.6
SHANK3Q9BYB0 ZSCAN2-208ENST00000485222 910 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SHANK3Q9BYB0 ZSCAN2-210ENST00000538076 1109 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SHANK3Q9BYB0 AP005131.2-201ENST00000589045 487 ntTSL 2 BASIC18.8■□□□□ 0.6
SHANK3Q9BYB0 AC007250.1-201ENST00000608934 338 ntBASIC18.8■□□□□ 0.6
SHANK3Q9BYB0 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
SHANK3Q9BYB0 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SHANK3Q9BYB0 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SHANK3Q9BYB0 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SHANK3Q9BYB0 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
SHANK3Q9BYB0 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC18.79■□□□□ 0.6
SHANK3Q9BYB0 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
SHANK3Q9BYB0 LINC02537-201ENST00000635943 1367 ntTSL 4 BASIC18.79■□□□□ 0.6
SHANK3Q9BYB0 AC019109.1-201ENST00000401725 1874 ntBASIC18.79■□□□□ 0.6
SHANK3Q9BYB0 MS4A15-201ENST00000337911 1536 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SHANK3Q9BYB0 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHANK3Q9BYB0 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SHANK3Q9BYB0 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SHANK3Q9BYB0 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHANK3Q9BYB0 AL162727.3-201ENST00000635661 2787 ntBASIC18.79■□□□□ 0.6
SHANK3Q9BYB0 LAIR1-209ENST00000434277 1645 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
SHANK3Q9BYB0 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC18.79■□□□□ 0.6
SHANK3Q9BYB0 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC18.79■□□□□ 0.6
SHANK3Q9BYB0 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHANK3Q9BYB0 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SHANK3Q9BYB0 SNX3-204ENST00000426155 1072 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SHANK3Q9BYB0 CSNK1G2P1-201ENST00000442675 955 ntBASIC18.79■□□□□ 0.6
SHANK3Q9BYB0 AP001062.3-202ENST00000444409 619 ntTSL 2 BASIC18.79■□□□□ 0.6
SHANK3Q9BYB0 AC004540.1-204ENST00000449537 727 ntTSL 2 BASIC18.79■□□□□ 0.6
SHANK3Q9BYB0 RPS5-204ENST00000598098 536 ntTSL 2 BASIC18.79■□□□□ 0.6
SHANK3Q9BYB0 CCDC113-206ENST00000616795 891 ntTSL 5 BASIC18.79■□□□□ 0.6
SHANK3Q9BYB0 ST5-261ENST00000626808 1071 ntTSL 5 BASIC18.79■□□□□ 0.6
SHANK3Q9BYB0 AL451007.2-201ENST00000632004 563 ntBASIC18.79■□□□□ 0.6
SHANK3Q9BYB0 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.79■□□□□ 0.6
SHANK3Q9BYB0 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SHANK3Q9BYB0 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC18.79■□□□□ 0.6
SHANK3Q9BYB0 AC011270.2-201ENST00000624293 2550 ntBASIC18.79■□□□□ 0.6
SHANK3Q9BYB0 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SHANK3Q9BYB0 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SHANK3Q9BYB0 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC18.78■□□□□ 0.6
SHANK3Q9BYB0 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SHANK3Q9BYB0 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SHANK3Q9BYB0 AL672207.1-201ENST00000328462 1570 ntBASIC18.78■□□□□ 0.6
SHANK3Q9BYB0 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
SHANK3Q9BYB0 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SHANK3Q9BYB0 AURKB-201ENST00000316199 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SHANK3Q9BYB0 BAK1P1-201ENST00000317045 636 ntBASIC18.78■□□□□ 0.6
SHANK3Q9BYB0 LCE2C-201ENST00000368783 614 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SHANK3Q9BYB0 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC18.78■□□□□ 0.6
SHANK3Q9BYB0 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC18.78■□□□□ 0.6
SHANK3Q9BYB0 SHBG-210ENST00000572262 984 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SHANK3Q9BYB0 POLR2E-204ENST00000586746 1096 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
SHANK3Q9BYB0 PTPN20CP-201ENST00000614090 920 ntBASIC18.78■□□□□ 0.6
SHANK3Q9BYB0 TP53-221ENST00000615910 1149 ntTSL 5 BASIC18.78■□□□□ 0.6
SHANK3Q9BYB0 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC18.78■□□□□ 0.6
SHANK3Q9BYB0 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC18.78■□□□□ 0.6
SHANK3Q9BYB0 MX1-218ENST00000619682 1980 ntTSL 5 BASIC18.78■□□□□ 0.6
SHANK3Q9BYB0 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
SHANK3Q9BYB0 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC18.78■□□□□ 0.6
SHANK3Q9BYB0 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
SHANK3Q9BYB0 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC18.78■□□□□ 0.6
SHANK3Q9BYB0 SERPINB6-206ENST00000380546 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SHANK3Q9BYB0 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC18.78■□□□□ 0.6
SHANK3Q9BYB0 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SHANK3Q9BYB0 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SHANK3Q9BYB0 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
SHANK3Q9BYB0 SULT1A1-201ENST00000314752 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SHANK3Q9BYB0 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC18.77■□□□□ 0.6
SHANK3Q9BYB0 AL158166.1-201ENST00000433110 371 ntTSL 2 BASIC18.77■□□□□ 0.6
SHANK3Q9BYB0 AL161932.2-201ENST00000435436 679 ntBASIC18.77■□□□□ 0.6
SHANK3Q9BYB0 FAHD2CP-203ENST00000467292 965 ntTSL 2 BASIC18.77■□□□□ 0.6
SHANK3Q9BYB0 AP003398.1-201ENST00000531124 318 ntBASIC18.77■□□□□ 0.6
SHANK3Q9BYB0 NDUFB10P1-201ENST00000567319 521 ntBASIC18.77■□□□□ 0.6
SHANK3Q9BYB0 AP001269.2-201ENST00000590055 379 ntTSL 3 BASIC18.77■□□□□ 0.6
SHANK3Q9BYB0 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 70.8 ms