Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC19.11■□□□□ 0.65
CHMP4AQ9BY43 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CHMP4AQ9BY43 AC013268.4-201ENST00000637413 2228 ntBASIC19.11■□□□□ 0.65
CHMP4AQ9BY43 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHMP4AQ9BY43 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHMP4AQ9BY43 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CHMP4AQ9BY43 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CHMP4AQ9BY43 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC19.11■□□□□ 0.65
CHMP4AQ9BY43 PTPA-218ENST00000435132 618 ntTSL 2 BASIC19.11■□□□□ 0.65
CHMP4AQ9BY43 AC004898.1-201ENST00000451057 766 ntBASIC19.11■□□□□ 0.65
CHMP4AQ9BY43 TUBB8P8-201ENST00000458717 1058 ntBASIC19.11■□□□□ 0.65
CHMP4AQ9BY43 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CHMP4AQ9BY43 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC19.11■□□□□ 0.65
CHMP4AQ9BY43 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CHMP4AQ9BY43 AC104640.1-201ENST00000562617 2109 ntBASIC19.11■□□□□ 0.65
CHMP4AQ9BY43 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CHMP4AQ9BY43 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC19.11■□□□□ 0.65
CHMP4AQ9BY43 AC104982.3-201ENST00000581995 514 ntBASIC19.11■□□□□ 0.65
CHMP4AQ9BY43 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC19.11■□□□□ 0.65
CHMP4AQ9BY43 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC19.11■□□□□ 0.65
CHMP4AQ9BY43 AP001002.3-201ENST00000623482 206 ntBASIC19.11■□□□□ 0.65
CHMP4AQ9BY43 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHMP4AQ9BY43 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
CHMP4AQ9BY43 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHMP4AQ9BY43 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHMP4AQ9BY43 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHMP4AQ9BY43 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHMP4AQ9BY43 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHMP4AQ9BY43 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC19.11■□□□□ 0.65
CHMP4AQ9BY43 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHMP4AQ9BY43 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC19.11■□□□□ 0.65
CHMP4AQ9BY43 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHMP4AQ9BY43 TSPY26P-202ENST00000565928 3884 ntBASIC19.11■□□□□ 0.65
CHMP4AQ9BY43 CELP-203ENST00000624767 2414 ntTSL 5 BASIC19.11■□□□□ 0.65
CHMP4AQ9BY43 FUK-207ENST00000571514 3054 ntTSL 2 BASIC19.11■□□□□ 0.65
CHMP4AQ9BY43 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CHMP4AQ9BY43 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHMP4AQ9BY43 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC19.11■□□□□ 0.65
CHMP4AQ9BY43 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC19.11■□□□□ 0.65
CHMP4AQ9BY43 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC19.11■□□□□ 0.65
CHMP4AQ9BY43 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC19.1■□□□□ 0.65
CHMP4AQ9BY43 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CHMP4AQ9BY43 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
CHMP4AQ9BY43 MIR600HG-201ENST00000449175 5984 ntBASIC19.1■□□□□ 0.65
CHMP4AQ9BY43 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC19.1■□□□□ 0.65
CHMP4AQ9BY43 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
CHMP4AQ9BY43 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CHMP4AQ9BY43 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CHMP4AQ9BY43 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CHMP4AQ9BY43 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CHMP4AQ9BY43 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
CHMP4AQ9BY43 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CHMP4AQ9BY43 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CHMP4AQ9BY43 AK6-201ENST00000380818 1183 ntTSL 2 BASIC19.1■□□□□ 0.65
CHMP4AQ9BY43 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC19.1■□□□□ 0.65
CHMP4AQ9BY43 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC19.1■□□□□ 0.65
CHMP4AQ9BY43 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC19.1■□□□□ 0.65
CHMP4AQ9BY43 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
CHMP4AQ9BY43 PUDPP3-201ENST00000445368 636 ntBASIC19.1■□□□□ 0.65
CHMP4AQ9BY43 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CHMP4AQ9BY43 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC19.1■□□□□ 0.65
CHMP4AQ9BY43 AC100850.1-201ENST00000506768 649 ntBASIC19.1■□□□□ 0.65
CHMP4AQ9BY43 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC19.1■□□□□ 0.65
CHMP4AQ9BY43 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC19.1■□□□□ 0.65
CHMP4AQ9BY43 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC19.1■□□□□ 0.65
CHMP4AQ9BY43 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC19.1■□□□□ 0.65
CHMP4AQ9BY43 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC19.1■□□□□ 0.65
CHMP4AQ9BY43 DUX4L46-201ENST00000566845 751 ntBASIC19.1■□□□□ 0.65
CHMP4AQ9BY43 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC19.1■□□□□ 0.65
CHMP4AQ9BY43 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC19.1■□□□□ 0.65
CHMP4AQ9BY43 AL022328.3-201ENST00000607943 679 ntBASIC19.1■□□□□ 0.65
CHMP4AQ9BY43 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC19.1■□□□□ 0.65
CHMP4AQ9BY43 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC19.1■□□□□ 0.65
CHMP4AQ9BY43 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC19.1■□□□□ 0.65
CHMP4AQ9BY43 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
CHMP4AQ9BY43 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CHMP4AQ9BY43 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CHMP4AQ9BY43 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CHMP4AQ9BY43 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC19.1■□□□□ 0.65
CHMP4AQ9BY43 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC19.1■□□□□ 0.65
CHMP4AQ9BY43 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CHMP4AQ9BY43 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC19.1■□□□□ 0.65
CHMP4AQ9BY43 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC19.1■□□□□ 0.65
CHMP4AQ9BY43 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC19.09■□□□□ 0.65
CHMP4AQ9BY43 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CHMP4AQ9BY43 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC19.09■□□□□ 0.65
CHMP4AQ9BY43 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CHMP4AQ9BY43 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CHMP4AQ9BY43 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CHMP4AQ9BY43 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC19.09■□□□□ 0.65
CHMP4AQ9BY43 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CHMP4AQ9BY43 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CHMP4AQ9BY43 AC006058.4-201ENST00000624016 1670 ntBASIC19.09■□□□□ 0.65
CHMP4AQ9BY43 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
CHMP4AQ9BY43 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CHMP4AQ9BY43 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC19.09■□□□□ 0.65
CHMP4AQ9BY43 PRKN-211ENST00000615065 261 ntTSL 5 BASIC19.09■□□□□ 0.65
CHMP4AQ9BY43 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CHMP4AQ9BY43 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
CHMP4AQ9BY43 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC19.09■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 67.3 ms