Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 MROH4P-201ENST00000431302 1578 ntBASIC23.98■■□□□ 1.43
IFT140Q96RY7 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC23.98■■□□□ 1.43
IFT140Q96RY7 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
IFT140Q96RY7 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
IFT140Q96RY7 IFNWP2-201ENST00000431203 580 ntBASIC23.98■■□□□ 1.43
IFT140Q96RY7 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC23.98■■□□□ 1.43
IFT140Q96RY7 CD300LF-206ENST00000464910 996 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
IFT140Q96RY7 RN7SL556P-201ENST00000582856 298 ntBASIC23.98■■□□□ 1.43
IFT140Q96RY7 AC011489.1-201ENST00000586744 690 ntTSL 3 BASIC23.98■■□□□ 1.43
IFT140Q96RY7 CTSH-218ENST00000615999 972 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
IFT140Q96RY7 PFDN5-220ENST00000628881 231 ntTSL 3 BASIC23.98■■□□□ 1.43
IFT140Q96RY7 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC23.98■■□□□ 1.43
IFT140Q96RY7 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
IFT140Q96RY7 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
IFT140Q96RY7 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC23.97■■□□□ 1.43
IFT140Q96RY7 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
IFT140Q96RY7 CST9-201ENST00000376971 1592 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
IFT140Q96RY7 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC23.97■■□□□ 1.43
IFT140Q96RY7 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC23.97■■□□□ 1.43
IFT140Q96RY7 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC23.97■■□□□ 1.43
IFT140Q96RY7 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC23.97■■□□□ 1.43
IFT140Q96RY7 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC23.97■■□□□ 1.43
IFT140Q96RY7 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
IFT140Q96RY7 DYNLT1-201ENST00000367085 774 ntTSL 2 BASIC23.97■■□□□ 1.43
IFT140Q96RY7 AC002127.2-201ENST00000444032 792 ntTSL 3 BASIC23.97■■□□□ 1.43
IFT140Q96RY7 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
IFT140Q96RY7 EEF1GP8-201ENST00000506566 1154 ntBASIC23.97■■□□□ 1.43
IFT140Q96RY7 POLR3G-207ENST00000514483 682 ntTSL 3 BASIC23.97■■□□□ 1.43
IFT140Q96RY7 GPX3-202ENST00000517973 612 ntTSL 3 BASIC23.97■■□□□ 1.43
IFT140Q96RY7 BID-209ENST00000551952 700 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
IFT140Q96RY7 SKA2-205ENST00000580541 689 ntTSL 3 BASIC23.97■■□□□ 1.43
IFT140Q96RY7 PRMT1P1-201ENST00000604252 1009 ntBASIC23.97■■□□□ 1.43
IFT140Q96RY7 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
IFT140Q96RY7 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC23.97■■□□□ 1.43
IFT140Q96RY7 AC106707.1-201ENST00000475981 1640 ntTSL 2 BASIC23.97■■□□□ 1.43
IFT140Q96RY7 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC23.97■■□□□ 1.43
IFT140Q96RY7 LINC00528-201ENST00000600723 2160 ntBASIC23.97■■□□□ 1.43
IFT140Q96RY7 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
IFT140Q96RY7 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC23.97■■□□□ 1.43
IFT140Q96RY7 B3GNTL1-201ENST00000320865 1383 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
IFT140Q96RY7 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC23.97■■□□□ 1.43
IFT140Q96RY7 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
IFT140Q96RY7 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
IFT140Q96RY7 C1orf87-202ENST00000450089 1307 ntTSL 5 BASIC23.96■■□□□ 1.43
IFT140Q96RY7 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
IFT140Q96RY7 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
IFT140Q96RY7 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC23.96■■□□□ 1.43
IFT140Q96RY7 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
IFT140Q96RY7 TXNL4B-203ENST00000426362 965 ntAPPRIS P1 TSL 2 BASIC23.96■■□□□ 1.43
IFT140Q96RY7 EFNA4-203ENST00000427683 1052 ntAPPRIS ALT2 TSL 2 BASIC23.96■■□□□ 1.43
IFT140Q96RY7 KRT18P62-201ENST00000446618 1287 ntBASIC23.96■■□□□ 1.43
IFT140Q96RY7 C5orf63-203ENST00000509733 553 ntTSL 4 BASIC23.96■■□□□ 1.43
IFT140Q96RY7 ARL17B-203ENST00000570618 1140 ntTSL 2 BASIC23.96■■□□□ 1.43
IFT140Q96RY7 KXD1-211ENST00000599319 707 ntAPPRIS P1 TSL 3 BASIC23.96■■□□□ 1.43
IFT140Q96RY7 AC008906.2-201ENST00000606656 474 ntTSL 2 BASIC23.96■■□□□ 1.43
IFT140Q96RY7 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
IFT140Q96RY7 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC23.96■■□□□ 1.43
IFT140Q96RY7 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
IFT140Q96RY7 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC23.96■■□□□ 1.43
IFT140Q96RY7 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC23.96■■□□□ 1.43
IFT140Q96RY7 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
IFT140Q96RY7 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
IFT140Q96RY7 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC23.96■■□□□ 1.43
IFT140Q96RY7 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC23.96■■□□□ 1.43
IFT140Q96RY7 AC012313.1-201ENST00000593393 3059 ntBASIC23.96■■□□□ 1.43
IFT140Q96RY7 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
IFT140Q96RY7 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
IFT140Q96RY7 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC23.95■■□□□ 1.43
IFT140Q96RY7 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC23.95■■□□□ 1.43
IFT140Q96RY7 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC23.95■■□□□ 1.43
IFT140Q96RY7 BX679664.3-201ENST00000414070 555 ntBASIC23.95■■□□□ 1.42
IFT140Q96RY7 AC113935.1-201ENST00000471722 555 ntBASIC23.95■■□□□ 1.42
IFT140Q96RY7 PRSS3P1-201ENST00000503996 742 ntBASIC23.95■■□□□ 1.42
IFT140Q96RY7 AC008443.1-202ENST00000506340 687 ntTSL 2 BASIC23.95■■□□□ 1.42
IFT140Q96RY7 AC145422.1-201ENST00000541574 544 ntTSL 3 BASIC23.95■■□□□ 1.42
IFT140Q96RY7 BLOC1S5-205ENST00000543936 368 ntTSL 2 BASIC23.95■■□□□ 1.42
IFT140Q96RY7 AC078814.4-201ENST00000546650 327 ntBASIC23.95■■□□□ 1.42
IFT140Q96RY7 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC23.95■■□□□ 1.42
IFT140Q96RY7 AC142086.5-202ENST00000562500 217 ntBASIC23.95■■□□□ 1.42
IFT140Q96RY7 TRAPPC2L-212ENST00000567312 499 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
IFT140Q96RY7 AL009176.1-201ENST00000607876 650 ntBASIC23.95■■□□□ 1.42
IFT140Q96RY7 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC23.95■■□□□ 1.42
IFT140Q96RY7 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
IFT140Q96RY7 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC23.95■■□□□ 1.42
IFT140Q96RY7 NECTIN1-203ENST00000341398 1377 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
IFT140Q96RY7 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
IFT140Q96RY7 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
IFT140Q96RY7 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC23.95■■□□□ 1.42
IFT140Q96RY7 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC23.95■■□□□ 1.42
IFT140Q96RY7 HTR3D-201ENST00000334128 1459 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
IFT140Q96RY7 LAP3P2-201ENST00000454686 1454 ntBASIC23.95■■□□□ 1.42
IFT140Q96RY7 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC23.95■■□□□ 1.42
IFT140Q96RY7 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC23.95■■□□□ 1.42
IFT140Q96RY7 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC23.95■■□□□ 1.42
IFT140Q96RY7 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC23.95■■□□□ 1.42
IFT140Q96RY7 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
IFT140Q96RY7 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
IFT140Q96RY7 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC23.94■■□□□ 1.42
IFT140Q96RY7 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC23.94■■□□□ 1.42
IFT140Q96RY7 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC23.94■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms