Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
HMGB4Q8WW32 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC15.05■□□□□ -0
HMGB4Q8WW32 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC15.05■□□□□ -0
HMGB4Q8WW32 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC15.05■□□□□ -0
HMGB4Q8WW32 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HMGB4Q8WW32 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC15.05■□□□□ -0
HMGB4Q8WW32 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HMGB4Q8WW32 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HMGB4Q8WW32 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC15.05■□□□□ -0
HMGB4Q8WW32 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC15.05■□□□□ -0
HMGB4Q8WW32 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HMGB4Q8WW32 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC15.04■□□□□ -0
HMGB4Q8WW32 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC15.04■□□□□ -0
HMGB4Q8WW32 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HMGB4Q8WW32 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
HMGB4Q8WW32 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC15.04■□□□□ -0
HMGB4Q8WW32 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC15.04■□□□□ -0
HMGB4Q8WW32 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HMGB4Q8WW32 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC15.04■□□□□ -0
HMGB4Q8WW32 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC15.04■□□□□ -0
HMGB4Q8WW32 AC026691.1-201ENST00000602502 2017 ntBASIC15.04■□□□□ -0
HMGB4Q8WW32 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HMGB4Q8WW32 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC15.04■□□□□ -0
HMGB4Q8WW32 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC15.04■□□□□ -0
HMGB4Q8WW32 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC15.04■□□□□ -0
HMGB4Q8WW32 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC15.04■□□□□ -0
HMGB4Q8WW32 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
HMGB4Q8WW32 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
HMGB4Q8WW32 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HMGB4Q8WW32 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC15.04■□□□□ -0
HMGB4Q8WW32 AK6-201ENST00000380818 1183 ntTSL 2 BASIC15.04■□□□□ -0
HMGB4Q8WW32 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC15.04■□□□□ -0
HMGB4Q8WW32 HNRNPA1P41-201ENST00000397777 928 ntBASIC15.04■□□□□ -0
HMGB4Q8WW32 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC15.04■□□□□ -0
HMGB4Q8WW32 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC15.04■□□□□ -0
HMGB4Q8WW32 PUDPP3-201ENST00000445368 636 ntBASIC15.04■□□□□ -0
HMGB4Q8WW32 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC15.04■□□□□ -0
HMGB4Q8WW32 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC15.04■□□□□ -0
HMGB4Q8WW32 AC090857.1-201ENST00000527400 390 ntBASIC15.04■□□□□ -0
HMGB4Q8WW32 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC15.04■□□□□ -0
HMGB4Q8WW32 PRKXP1-201ENST00000561423 1122 ntBASIC15.04■□□□□ -0
HMGB4Q8WW32 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC15.04■□□□□ -0
HMGB4Q8WW32 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC15.04■□□□□ -0
HMGB4Q8WW32 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC15.04■□□□□ -0
HMGB4Q8WW32 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC15.04■□□□□ -0
HMGB4Q8WW32 AC008805.1-201ENST00000590892 364 ntBASIC15.04■□□□□ -0
HMGB4Q8WW32 SPCS2P2-201ENST00000603270 608 ntBASIC15.04■□□□□ -0
HMGB4Q8WW32 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
HMGB4Q8WW32 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HMGB4Q8WW32 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HMGB4Q8WW32 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HMGB4Q8WW32 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
HMGB4Q8WW32 AL513477.1-201ENST00000602865 2407 ntBASIC15.04■□□□□ -0
HMGB4Q8WW32 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC15.04■□□□□ -0
HMGB4Q8WW32 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC15.04■□□□□ -0
HMGB4Q8WW32 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
HMGB4Q8WW32 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HMGB4Q8WW32 DKFZP434H168-201ENST00000567381 1905 ntBASIC15.04■□□□□ -0
HMGB4Q8WW32 AC090616.6-203ENST00000579186 1945 ntBASIC15.04■□□□□ -0
HMGB4Q8WW32 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC15.03■□□□□ -0
HMGB4Q8WW32 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC15.03■□□□□ -0
HMGB4Q8WW32 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC15.03■□□□□ -0
HMGB4Q8WW32 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
HMGB4Q8WW32 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
HMGB4Q8WW32 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC15.03■□□□□ -0
HMGB4Q8WW32 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC15.03■□□□□ -0
HMGB4Q8WW32 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC15.03■□□□□ -0
HMGB4Q8WW32 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
HMGB4Q8WW32 BANP-204ENST00000393208 2283 ntTSL 2 BASIC15.03■□□□□ -0
HMGB4Q8WW32 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
HMGB4Q8WW32 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC15.03■□□□□ -0
HMGB4Q8WW32 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC15.03■□□□□ -0
HMGB4Q8WW32 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
HMGB4Q8WW32 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC15.03■□□□□ -0
HMGB4Q8WW32 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
HMGB4Q8WW32 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC15.03■□□□□ -0
HMGB4Q8WW32 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC15.03■□□□□ -0
HMGB4Q8WW32 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
HMGB4Q8WW32 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
HMGB4Q8WW32 NME2-201ENST00000393183 568 ntTSL 2 BASIC15.03■□□□□ -0
HMGB4Q8WW32 MPV17-204ENST00000399052 749 ntTSL 4 BASIC15.03■□□□□ -0
HMGB4Q8WW32 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC15.03■□□□□ -0
HMGB4Q8WW32 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC15.03■□□□□ -0
HMGB4Q8WW32 CENPX-208ENST00000584347 799 ntTSL 2 BASIC15.03■□□□□ -0
HMGB4Q8WW32 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC15.03■□□□□ -0
HMGB4Q8WW32 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC15.03■□□□□ -0
HMGB4Q8WW32 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC15.03■□□□□ -0
HMGB4Q8WW32 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC15.03■□□□□ -0
HMGB4Q8WW32 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC15.03■□□□□ -0
HMGB4Q8WW32 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC15.03■□□□□ -0
HMGB4Q8WW32 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC15.03■□□□□ -0
HMGB4Q8WW32 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
HMGB4Q8WW32 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC15.03■□□□□ -0
HMGB4Q8WW32 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
HMGB4Q8WW32 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC15.03■□□□□ -0
HMGB4Q8WW32 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC15.03■□□□□ -0
HMGB4Q8WW32 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
HMGB4Q8WW32 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
HMGB4Q8WW32 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
HMGB4Q8WW32 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC15.02■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 67.6 ms