Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 AC097493.3-201ENST00000509725 367 ntBASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 GLI4-203ENST00000517468 963 ntTSL 5 BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 AC036164.1-201ENST00000570544 333 ntBASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 AL590560.3-201ENST00000623350 461 ntBASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 AL158212.4-201ENST00000624062 1286 ntBASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 CDH1-201ENST00000261769 4889 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 XPOT-201ENST00000332707 6414 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 ARHGAP31-201ENST00000264245 9317 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 ADGRG6-202ENST00000296932 6849 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 BDKRB2-202ENST00000542454 6845 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 SPTBN2-209ENST00000533211 8128 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 MTUS1-204ENST00000381869 6256 ntTSL 5 BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 TGFBR3-201ENST00000212355 6465 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 COL6A3-202ENST00000347401 8625 ntTSL 5 BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 COL6A3-209ENST00000472056 8628 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 ZDHHC15-201ENST00000373367 5796 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 SYT12-201ENST00000393946 4534 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 AC018665.1-201ENST00000622927 1362 ntBASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 AC140479.7-201ENST00000636301 2332 ntBASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 TOM1L2-214ENST00000581396 5595 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 GLIS3-201ENST00000324333 6667 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 JMJD6-208ENST00000617192 5517 ntTSL 5 BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 FAM9C-205ENST00000542843 5858 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 CDH3-201ENST00000264012 4929 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 NEU3-201ENST00000294064 6728 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 REV3L-207ENST00000435970 10943 ntTSL 2 BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 AC092580.3-201ENST00000430932 139 ntBASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 AC009477.1-201ENST00000452936 217 ntBASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 RAB35-202ENST00000534951 939 ntTSL 2 BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 PRR29-204ENST00000577953 565 ntTSL 4 BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 GPX4-206ENST00000588919 803 ntTSL 2 BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 AL603764.1-201ENST00000636452 321 ntBASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 AL731571.1-201ENST00000617058 5428 ntBASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 LAMB1-201ENST00000222399 5725 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 SF1-209ENST00000433274 2317 ntTSL 2 BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 AC073957.3-201ENST00000609998 6758 ntBASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 AC113367.3-201ENST00000508316 1912 ntBASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 TROVE2-208ENST00000432079 7848 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 DENND3-211ENST00000519811 5482 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 85.4 ms