Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 RGS6-201ENST00000343854 5342 ntTSL 5 BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 RASA4CP-203ENST00000446874 3193 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 ENG-201ENST00000344849 3059 ntAPPRIS P3 TSL 1 (best) BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 MCM7-213ENST00000621318 3084 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 Z83844.1-201ENST00000455236 4904 ntAPPRIS P1 TSL 5 BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 KCNMA1-227ENST00000638203 3840 ntAPPRIS ALT2 TSL 5 BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 SRP54-201ENST00000216774 2279 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 ZNF185-205ENST00000370270 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 AL355388.2-201ENST00000610146 2157 ntTSL 4 BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 AL132642.2-201ENST00000623423 1998 ntBASIC9.3□□□□□ -0.92
LINC00643Q86TS7 GRK7-201ENST00000264952 3239 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 ILF3-219ENST00000590261 3219 ntAPPRIS P3 TSL 5 BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 RAPGEF6-207ENST00000507093 5742 ntAPPRIS ALT1 TSL 1 (best) BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 CACNA1G-232ENST00000515411 6960 ntAPPRIS ALT2 TSL 1 (best) BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 RASAL2-201ENST00000367649 4378 ntAPPRIS P4 TSL 1 (best) BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 PCID2-205ENST00000375477 1654 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 ZNF236-202ENST00000320610 7124 ntAPPRIS ALT2 TSL 1 (best) BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 SAP30BP-225ENST00000584667 2722 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 CARS-214ENST00000529772 2637 ntTSL 2 BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 AL139011.2-201ENST00000556710 2635 ntAPPRIS P1 TSL 2 BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 TNFRSF8-203ENST00000417814 3593 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 FMNL3-205ENST00000550488 4120 ntAPPRIS ALT2 TSL 5 BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 TNRC6C-201ENST00000301624 9632 ntAPPRIS ALT2 TSL 5 BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 DNMT3B-203ENST00000348286 4048 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 MKL1-210ENST00000614754 3917 ntTSL 5 BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 DYNC1I1-201ENST00000324972 2950 ntAPPRIS P3 TSL 1 (best) BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 VMO1-203ENST00000416307 712 ntTSL 2 BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 KRT18P48-201ENST00000434763 852 ntBASIC9.3□□□□□ -0.92
LINC00643Q86TS7 AL356441.2-201ENST00000443009 864 ntBASIC9.3□□□□□ -0.92
LINC00643Q86TS7 RARRES2P1-201ENST00000474487 481 ntBASIC9.3□□□□□ -0.92
LINC00643Q86TS7 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 AC073862.5-201ENST00000624129 2027 ntBASIC9.3□□□□□ -0.92
LINC00643Q86TS7 TNFSF8-201ENST00000223795 1906 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 STARD13-201ENST00000255486 5798 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 STARD13-204ENST00000399365 5784 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 ARMCX2-202ENST00000330154 2663 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 ANGPTL2-201ENST00000373417 2575 ntTSL 2 BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 PSMD2-205ENST00000435761 2574 ntTSL 2 BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 CPA5-208ENST00000485477 2573 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 TMPRSS13-205ENST00000526090 2592 ntTSL 2 BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 ANKS1B-208ENST00000547010 2595 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 F2-205ENST00000530231 1849 ntTSL 5 BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 FANCC-202ENST00000375305 4504 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 PRKCG-201ENST00000263431 3133 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 AGAP2-203ENST00000547588 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 EIF2AK1-201ENST00000199389 4469 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 RPH3A-202ENST00000415485 4452 ntAPPRIS ALT2 TSL 5 BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 SLC28A1-201ENST00000286749 2636 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 CDH8-201ENST00000299345 3728 ntTSL 5 BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 ANXA11-201ENST00000265447 2526 ntAPPRIS ALT2 TSL 5 BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 LVRN-202ENST00000395528 4544 ntTSL 5 BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 POLD1-205ENST00000595904 3402 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 POPDC2-201ENST00000264231 1679 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 MAX-212ENST00000555932 1673 ntTSL 5 BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 MATN2-211ENST00000521689 3554 ntAPPRIS ALT2 TSL 1 (best) BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 AXL-203ENST00000593513 2557 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 ATG4C-201ENST00000317868 2938 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 C22orf39-202ENST00000399562 3350 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 HERPUD1-204ENST00000439977 2946 ntAPPRIS P3 TSL 1 (best) BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 CASC15-204ENST00000606197 3969 ntTSL 2 BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 IKZF4-201ENST00000262032 5229 ntAPPRIS P1 TSL 5 BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 ZDHHC11-201ENST00000283441 2604 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 KCNAB2-206ENST00000378097 4201 ntAPPRIS P4 TSL 1 (best) BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 NDRG4-201ENST00000258187 3324 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 PRPF40B-209ENST00000548825 3307 ntAPPRIS P2 TSL 5 BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 ABR-202ENST00000302538 5289 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms