Protein–RNA interactions for Protein: Q2NKJ3

CTC1, CST complex subunit CTC1, humanhuman

Predictions only

Length 1,217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTC1Q2NKJ3 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC16.06■□□□□ 0.16
CTC1Q2NKJ3 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CTC1Q2NKJ3 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
CTC1Q2NKJ3 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CTC1Q2NKJ3 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CTC1Q2NKJ3 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CTC1Q2NKJ3 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
CTC1Q2NKJ3 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CTC1Q2NKJ3 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CTC1Q2NKJ3 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CTC1Q2NKJ3 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CTC1Q2NKJ3 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
CTC1Q2NKJ3 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
CTC1Q2NKJ3 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CTC1Q2NKJ3 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC16.05■□□□□ 0.16
CTC1Q2NKJ3 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
CTC1Q2NKJ3 FLII-221ENST00000578558 2377 ntTSL 5 BASIC16.05■□□□□ 0.16
CTC1Q2NKJ3 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC16.05■□□□□ 0.16
CTC1Q2NKJ3 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC16.05■□□□□ 0.16
CTC1Q2NKJ3 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
CTC1Q2NKJ3 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC16.05■□□□□ 0.16
CTC1Q2NKJ3 AC026316.1-201ENST00000398900 414 ntBASIC16.05■□□□□ 0.16
CTC1Q2NKJ3 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
CTC1Q2NKJ3 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC16.05■□□□□ 0.16
CTC1Q2NKJ3 SERPINA7P1-201ENST00000443077 631 ntBASIC16.05■□□□□ 0.16
CTC1Q2NKJ3 AC098935.1-201ENST00000446057 611 ntBASIC16.05■□□□□ 0.16
CTC1Q2NKJ3 AC104073.2-201ENST00000453737 312 ntBASIC16.05■□□□□ 0.16
CTC1Q2NKJ3 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC16.05■□□□□ 0.16
CTC1Q2NKJ3 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC16.05■□□□□ 0.16
CTC1Q2NKJ3 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC16.05■□□□□ 0.16
CTC1Q2NKJ3 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC16.05■□□□□ 0.16
CTC1Q2NKJ3 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CTC1Q2NKJ3 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CTC1Q2NKJ3 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CTC1Q2NKJ3 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC16.05■□□□□ 0.16
CTC1Q2NKJ3 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC16.05■□□□□ 0.16
CTC1Q2NKJ3 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CTC1Q2NKJ3 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CTC1Q2NKJ3 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CTC1Q2NKJ3 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC16.05■□□□□ 0.16
CTC1Q2NKJ3 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC16.05■□□□□ 0.16
CTC1Q2NKJ3 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC16.05■□□□□ 0.16
CTC1Q2NKJ3 AC007292.2-201ENST00000593524 1812 ntBASIC16.05■□□□□ 0.16
CTC1Q2NKJ3 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CTC1Q2NKJ3 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CTC1Q2NKJ3 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CTC1Q2NKJ3 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CTC1Q2NKJ3 AL359258.3-201ENST00000622910 2331 ntBASIC16.05■□□□□ 0.16
CTC1Q2NKJ3 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC16.05■□□□□ 0.16
CTC1Q2NKJ3 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CTC1Q2NKJ3 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CTC1Q2NKJ3 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CTC1Q2NKJ3 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
CTC1Q2NKJ3 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CTC1Q2NKJ3 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CTC1Q2NKJ3 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
CTC1Q2NKJ3 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CTC1Q2NKJ3 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CTC1Q2NKJ3 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CTC1Q2NKJ3 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CTC1Q2NKJ3 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CTC1Q2NKJ3 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
CTC1Q2NKJ3 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC16.04■□□□□ 0.16
CTC1Q2NKJ3 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC16.04■□□□□ 0.16
CTC1Q2NKJ3 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC16.04■□□□□ 0.16
CTC1Q2NKJ3 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CTC1Q2NKJ3 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CTC1Q2NKJ3 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CTC1Q2NKJ3 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CTC1Q2NKJ3 RNMTL1P1-201ENST00000454103 560 ntBASIC16.04■□□□□ 0.16
CTC1Q2NKJ3 CEP164P1-201ENST00000455142 418 ntBASIC16.04■□□□□ 0.16
CTC1Q2NKJ3 TUBB8P8-201ENST00000458717 1058 ntBASIC16.04■□□□□ 0.16
CTC1Q2NKJ3 RGS1-203ENST00000469578 1034 ntTSL 2 BASIC16.04■□□□□ 0.16
CTC1Q2NKJ3 AC019193.1-201ENST00000506678 823 ntBASIC16.04■□□□□ 0.16
CTC1Q2NKJ3 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC16.04■□□□□ 0.16
CTC1Q2NKJ3 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC16.04■□□□□ 0.16
CTC1Q2NKJ3 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CTC1Q2NKJ3 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC16.04■□□□□ 0.16
CTC1Q2NKJ3 AC103988.2-201ENST00000561804 725 ntBASIC16.04■□□□□ 0.16
CTC1Q2NKJ3 AC005324.6-201ENST00000587972 613 ntBASIC16.04■□□□□ 0.16
CTC1Q2NKJ3 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CTC1Q2NKJ3 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC16.04■□□□□ 0.16
CTC1Q2NKJ3 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC16.04■□□□□ 0.16
CTC1Q2NKJ3 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC16.04■□□□□ 0.16
CTC1Q2NKJ3 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
CTC1Q2NKJ3 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
CTC1Q2NKJ3 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
CTC1Q2NKJ3 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CTC1Q2NKJ3 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
CTC1Q2NKJ3 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CTC1Q2NKJ3 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
CTC1Q2NKJ3 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CTC1Q2NKJ3 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CTC1Q2NKJ3 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC16.04■□□□□ 0.16
CTC1Q2NKJ3 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CTC1Q2NKJ3 C8orf49-201ENST00000525043 1968 ntBASIC16.04■□□□□ 0.16
CTC1Q2NKJ3 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC16.04■□□□□ 0.16
CTC1Q2NKJ3 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC16.04■□□□□ 0.16
CTC1Q2NKJ3 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CTC1Q2NKJ3 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms