Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC10.43□□□□□ -0.74
PRKDCP78527 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC10.43□□□□□ -0.74
PRKDCP78527 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC10.43□□□□□ -0.74
PRKDCP78527 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC10.43□□□□□ -0.74
PRKDCP78527 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC10.43□□□□□ -0.74
PRKDCP78527 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC10.43□□□□□ -0.74
PRKDCP78527 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
PRKDCP78527 CRIP1P2-201ENST00000425396 228 ntBASIC10.43□□□□□ -0.74
PRKDCP78527 KCNMA1-AS1-201ENST00000426234 863 ntTSL 5 BASIC10.43□□□□□ -0.74
PRKDCP78527 HNRNPA1P10-201ENST00000444945 962 ntBASIC10.43□□□□□ -0.74
PRKDCP78527 PDCD2-205ENST00000537445 1114 ntTSL 3 BASIC10.43□□□□□ -0.74
PRKDCP78527 AL132994.1-201ENST00000554098 400 ntBASIC10.43□□□□□ -0.74
PRKDCP78527 PFDN5-220ENST00000628881 231 ntTSL 3 BASIC10.43□□□□□ -0.74
PRKDCP78527 PSMC5-201ENST00000310144 1579 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
PRKDCP78527 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC10.43□□□□□ -0.74
PRKDCP78527 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC10.43□□□□□ -0.74
PRKDCP78527 AC007952.5-201ENST00000572818 1486 ntBASIC10.43□□□□□ -0.74
PRKDCP78527 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
PRKDCP78527 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
PRKDCP78527 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC10.43□□□□□ -0.74
PRKDCP78527 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC10.43□□□□□ -0.74
PRKDCP78527 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
PRKDCP78527 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC10.43□□□□□ -0.74
PRKDCP78527 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
PRKDCP78527 RIBC1-202ENST00000375327 1420 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
PRKDCP78527 POLR2G-201ENST00000301788 827 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
PRKDCP78527 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC10.43□□□□□ -0.74
PRKDCP78527 LINP1-201ENST00000417112 917 ntTSL 2 BASIC10.43□□□□□ -0.74
PRKDCP78527 DMKN-211ENST00000436012 848 ntAPPRIS ALT2 TSL 2 BASIC10.43□□□□□ -0.74
PRKDCP78527 AL136084.1-201ENST00000449172 318 ntBASIC10.43□□□□□ -0.74
PRKDCP78527 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC10.43□□□□□ -0.74
PRKDCP78527 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC10.43□□□□□ -0.74
PRKDCP78527 WNT8A-202ENST00000398754 1498 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
PRKDCP78527 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC10.43□□□□□ -0.74
PRKDCP78527 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
PRKDCP78527 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC10.43□□□□□ -0.74
PRKDCP78527 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
PRKDCP78527 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
PRKDCP78527 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC10.43□□□□□ -0.74
PRKDCP78527 LINC02447-202ENST00000501888 2146 ntBASIC10.43□□□□□ -0.74
PRKDCP78527 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC10.43□□□□□ -0.74
PRKDCP78527 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC10.43□□□□□ -0.74
PRKDCP78527 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC10.43□□□□□ -0.74
PRKDCP78527 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
PRKDCP78527 AC022080.1-201ENST00000366255 781 ntBASIC10.43□□□□□ -0.74
PRKDCP78527 NDUFB6-202ENST00000366466 761 ntTSL 2 BASIC10.43□□□□□ -0.74
PRKDCP78527 AIG1-203ENST00000367596 559 ntTSL 2 BASIC10.43□□□□□ -0.74
PRKDCP78527 S100A7A-202ENST00000368728 440 ntAPPRIS P1 TSL 5 BASIC10.43□□□□□ -0.74
PRKDCP78527 IGLV3-9-201ENST00000390316 461 ntAPPRIS P1 BASIC10.43□□□□□ -0.74
PRKDCP78527 SLC12A9-AS1-201ENST00000412754 369 ntTSL 3 BASIC10.43□□□□□ -0.74
PRKDCP78527 LINC01656-201ENST00000415702 630 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
PRKDCP78527 PLSCR1-202ENST00000448787 996 ntAPPRIS ALT2 TSL 2 BASIC10.43□□□□□ -0.74
PRKDCP78527 RN7SL87P-201ENST00000497657 288 ntBASIC10.43□□□□□ -0.74
PRKDCP78527 SRP54-AS1-204ENST00000556705 580 ntTSL 2 BASIC10.43□□□□□ -0.74
PRKDCP78527 AC087741.1-204ENST00000573935 646 ntTSL 3 BASIC10.43□□□□□ -0.74
PRKDCP78527 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
PRKDCP78527 RPL13AP3-202ENST00000494676 1473 ntBASIC10.43□□□□□ -0.74
PRKDCP78527 C7orf49-214ENST00000620897 1349 ntTSL 3 BASIC10.42□□□□□ -0.74
PRKDCP78527 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC10.42□□□□□ -0.74
PRKDCP78527 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
PRKDCP78527 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC10.42□□□□□ -0.74
PRKDCP78527 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
PRKDCP78527 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC10.42□□□□□ -0.74
PRKDCP78527 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
PRKDCP78527 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC10.42□□□□□ -0.74
PRKDCP78527 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
PRKDCP78527 PAX5-203ENST00000377847 996 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
PRKDCP78527 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC10.42□□□□□ -0.74
PRKDCP78527 AC004771.1-201ENST00000438266 583 ntTSL 2 BASIC10.42□□□□□ -0.74
PRKDCP78527 AL031587.2-201ENST00000445483 414 ntTSL 5 BASIC10.42□□□□□ -0.74
PRKDCP78527 TRBC2-201ENST00000466254 758 ntAPPRIS P1 BASIC10.42□□□□□ -0.74
PRKDCP78527 TMEM14B-215ENST00000481240 1032 ntTSL 2 BASIC10.42□□□□□ -0.74
PRKDCP78527 EEF1GP8-201ENST00000506566 1154 ntBASIC10.42□□□□□ -0.74
PRKDCP78527 PAX5-213ENST00000523145 830 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
PRKDCP78527 AC016590.1-201ENST00000588763 420 ntTSL 2 BASIC10.42□□□□□ -0.74
PRKDCP78527 LINC00244-201ENST00000625073 613 ntBASIC10.42□□□□□ -0.74
PRKDCP78527 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
PRKDCP78527 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC10.42□□□□□ -0.74
PRKDCP78527 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC10.42□□□□□ -0.74
PRKDCP78527 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC10.42□□□□□ -0.74
PRKDCP78527 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
PRKDCP78527 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
PRKDCP78527 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC10.42□□□□□ -0.74
PRKDCP78527 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC10.42□□□□□ -0.74
PRKDCP78527 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
PRKDCP78527 OASL-202ENST00000339275 1492 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
PRKDCP78527 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC10.42□□□□□ -0.74
PRKDCP78527 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
PRKDCP78527 VKORC1-203ENST00000354895 901 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
PRKDCP78527 AC131011.1-201ENST00000366134 672 ntTSL 3 BASIC10.42□□□□□ -0.74
PRKDCP78527 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC10.42□□□□□ -0.74
PRKDCP78527 AC005722.1-201ENST00000431878 964 ntBASIC10.42□□□□□ -0.74
PRKDCP78527 AC008021.1-201ENST00000474180 414 ntBASIC10.42□□□□□ -0.74
PRKDCP78527 C12orf57-204ENST00000540506 551 ntTSL 2 BASIC10.42□□□□□ -0.74
PRKDCP78527 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC10.42□□□□□ -0.74
PRKDCP78527 AC022098.2-201ENST00000590528 518 ntTSL 4 BASIC10.42□□□□□ -0.74
PRKDCP78527 HKR1-220ENST00000591259 734 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
PRKDCP78527 ZNF724-202ENST00000597037 780 ntTSL 2 BASIC10.42□□□□□ -0.74
PRKDCP78527 POU5F1-207ENST00000606567 1236 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
PRKDCP78527 BCAS4-206ENST00000609336 787 ntAPPRIS ALT2 TSL 1 (best) BASIC10.42□□□□□ -0.74
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms