Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
MSH6P52701 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
MSH6P52701 CDKN2C-202ENST00000371761 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
MSH6P52701 MBD3L4-201ENST00000381394 775 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
MSH6P52701 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC20.39■□□□□ 0.85
MSH6P52701 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
MSH6P52701 AC026470.1-201ENST00000478038 846 ntBASIC20.39■□□□□ 0.85
MSH6P52701 BANF1-205ENST00000527348 670 ntAPPRIS P1 TSL 3 BASIC20.39■□□□□ 0.85
MSH6P52701 AC105219.2-201ENST00000527908 299 ntTSL 4 BASIC20.39■□□□□ 0.85
MSH6P52701 MIR6816-201ENST00000620368 66 ntBASIC20.39■□□□□ 0.85
MSH6P52701 MIR6746-201ENST00000620971 63 ntBASIC20.39■□□□□ 0.85
MSH6P52701 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
MSH6P52701 KCTD6-202ENST00000404589 1533 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
MSH6P52701 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
MSH6P52701 LAMA1-209ENST00000638611 1310 ntTSL 5 BASIC20.39■□□□□ 0.85
MSH6P52701 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC20.39■□□□□ 0.85
MSH6P52701 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC20.39■□□□□ 0.85
MSH6P52701 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
MSH6P52701 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
MSH6P52701 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
MSH6P52701 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
MSH6P52701 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
MSH6P52701 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
MSH6P52701 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
MSH6P52701 SUPT20HL2-201ENST00000486479 2409 ntBASIC20.38■□□□□ 0.85
MSH6P52701 SCAMP1-AS1-201ENST00000421004 1479 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
MSH6P52701 AC012508.2-201ENST00000567613 1472 ntBASIC20.38■□□□□ 0.85
MSH6P52701 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
MSH6P52701 PCDHA1-201ENST00000378133 2726 ntBASIC20.38■□□□□ 0.85
MSH6P52701 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
MSH6P52701 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
MSH6P52701 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
MSH6P52701 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
MSH6P52701 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
MSH6P52701 CRHR1-205ENST00000352855 1146 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
MSH6P52701 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC20.38■□□□□ 0.85
MSH6P52701 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC20.38■□□□□ 0.85
MSH6P52701 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC20.38■□□□□ 0.85
MSH6P52701 CSNK1G2P1-201ENST00000442675 955 ntBASIC20.38■□□□□ 0.85
MSH6P52701 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
MSH6P52701 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
MSH6P52701 RN7SL23P-201ENST00000484055 275 ntBASIC20.38■□□□□ 0.85
MSH6P52701 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
MSH6P52701 OR5BD1P-201ENST00000532527 817 ntBASIC20.38■□□□□ 0.85
MSH6P52701 AC131206.1-201ENST00000538078 1211 ntBASIC20.38■□□□□ 0.85
MSH6P52701 AC226150.1-201ENST00000544259 466 ntBASIC20.38■□□□□ 0.85
MSH6P52701 MIR5001-201ENST00000580185 100 ntBASIC20.38■□□□□ 0.85
MSH6P52701 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
MSH6P52701 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
MSH6P52701 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC20.38■□□□□ 0.85
MSH6P52701 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
MSH6P52701 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
MSH6P52701 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
MSH6P52701 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC20.38■□□□□ 0.85
MSH6P52701 LAIR1-209ENST00000434277 1645 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
MSH6P52701 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
MSH6P52701 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC20.38■□□□□ 0.85
MSH6P52701 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
MSH6P52701 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
MSH6P52701 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC20.38■□□□□ 0.85
MSH6P52701 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
MSH6P52701 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC20.38■□□□□ 0.85
MSH6P52701 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
MSH6P52701 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
MSH6P52701 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC20.38■□□□□ 0.85
MSH6P52701 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC20.37■□□□□ 0.85
MSH6P52701 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC20.37■□□□□ 0.85
MSH6P52701 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
MSH6P52701 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
MSH6P52701 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC20.37■□□□□ 0.85
MSH6P52701 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC20.37■□□□□ 0.85
MSH6P52701 PLAC9-203ENST00000372270 534 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
MSH6P52701 MDS2-201ENST00000374555 1029 ntAPPRIS P5 TSL 1 (best) BASIC20.37■□□□□ 0.85
MSH6P52701 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
MSH6P52701 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC20.37■□□□□ 0.85
MSH6P52701 MIR566-201ENST00000385187 94 ntBASIC20.37■□□□□ 0.85
MSH6P52701 HNRNPA1P27-201ENST00000412087 955 ntBASIC20.37■□□□□ 0.85
MSH6P52701 GNG10P1-201ENST00000452289 199 ntBASIC20.37■□□□□ 0.85
MSH6P52701 RPL18AP8-201ENST00000486071 528 ntBASIC20.37■□□□□ 0.85
MSH6P52701 CISD2-202ENST00000503643 808 ntTSL 2 BASIC20.37■□□□□ 0.85
MSH6P52701 AC012213.1-201ENST00000517376 722 ntTSL 3 BASIC20.37■□□□□ 0.85
MSH6P52701 TGFB3-204ENST00000556285 1280 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
MSH6P52701 BRSK1-203ENST00000585418 1104 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
MSH6P52701 AC010504.1-201ENST00000591311 585 ntTSL 3 BASIC20.37■□□□□ 0.85
MSH6P52701 AC021016.3-201ENST00000608367 477 ntBASIC20.37■□□□□ 0.85
MSH6P52701 PTPN20CP-201ENST00000614090 920 ntBASIC20.37■□□□□ 0.85
MSH6P52701 AC027559.1-203ENST00000635726 517 ntTSL 5 BASIC20.37■□□□□ 0.85
MSH6P52701 AC079325.2-201ENST00000641710 606 ntAPPRIS P5 BASIC20.37■□□□□ 0.85
MSH6P52701 CD79B-201ENST00000006750 1269 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
MSH6P52701 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
MSH6P52701 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
MSH6P52701 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
MSH6P52701 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
MSH6P52701 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
MSH6P52701 FTX-216ENST00000638985 1367 ntTSL 5 BASIC20.37■□□□□ 0.85
MSH6P52701 SALL4P5-201ENST00000419001 1760 ntBASIC20.37■□□□□ 0.85
MSH6P52701 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC20.37■□□□□ 0.85
MSH6P52701 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
MSH6P52701 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
MSH6P52701 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms