Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC14.66□□□□□ -0.06
HNF4AP41235 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HNF4AP41235 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
HNF4AP41235 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HNF4AP41235 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
HNF4AP41235 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HNF4AP41235 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
HNF4AP41235 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
HNF4AP41235 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HNF4AP41235 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HNF4AP41235 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC14.66□□□□□ -0.06
HNF4AP41235 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HNF4AP41235 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HNF4AP41235 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HNF4AP41235 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
HNF4AP41235 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
HNF4AP41235 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HNF4AP41235 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HNF4AP41235 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
HNF4AP41235 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HNF4AP41235 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
HNF4AP41235 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC14.65□□□□□ -0.06
HNF4AP41235 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
HNF4AP41235 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HNF4AP41235 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HNF4AP41235 NSL1-201ENST00000366976 722 ntTSL 2 BASIC14.65□□□□□ -0.06
HNF4AP41235 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HNF4AP41235 AL139094.1-201ENST00000405549 1188 ntBASIC14.65□□□□□ -0.06
HNF4AP41235 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HNF4AP41235 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HNF4AP41235 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC14.65□□□□□ -0.06
HNF4AP41235 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HNF4AP41235 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC14.65□□□□□ -0.06
HNF4AP41235 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC14.65□□□□□ -0.06
HNF4AP41235 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC14.65□□□□□ -0.06
HNF4AP41235 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC14.65□□□□□ -0.06
HNF4AP41235 AC124283.3-201ENST00000570869 594 ntBASIC14.65□□□□□ -0.06
HNF4AP41235 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC14.65□□□□□ -0.06
HNF4AP41235 AC027307.3-201ENST00000594262 1100 ntBASIC14.65□□□□□ -0.06
HNF4AP41235 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC14.65□□□□□ -0.06
HNF4AP41235 CU634019.7-201ENST00000624153 1185 ntBASIC14.65□□□□□ -0.06
HNF4AP41235 FP236241.2-201ENST00000624906 1185 ntBASIC14.65□□□□□ -0.06
HNF4AP41235 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
HNF4AP41235 AC025048.6-201ENST00000634326 1161 ntBASIC14.65□□□□□ -0.06
HNF4AP41235 AL033527.5-201ENST00000641382 801 ntBASIC14.65□□□□□ -0.06
HNF4AP41235 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
HNF4AP41235 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HNF4AP41235 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HNF4AP41235 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HNF4AP41235 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HNF4AP41235 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HNF4AP41235 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
HNF4AP41235 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HNF4AP41235 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC14.65□□□□□ -0.06
HNF4AP41235 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC14.65□□□□□ -0.06
HNF4AP41235 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HNF4AP41235 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC14.65□□□□□ -0.07
HNF4AP41235 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC14.64□□□□□ -0.07
HNF4AP41235 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HNF4AP41235 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HNF4AP41235 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HNF4AP41235 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HNF4AP41235 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
HNF4AP41235 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
HNF4AP41235 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
HNF4AP41235 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
HNF4AP41235 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC14.64□□□□□ -0.07
HNF4AP41235 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
HNF4AP41235 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
HNF4AP41235 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
HNF4AP41235 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HNF4AP41235 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC14.64□□□□□ -0.07
HNF4AP41235 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HNF4AP41235 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC14.64□□□□□ -0.07
HNF4AP41235 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HNF4AP41235 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC14.64□□□□□ -0.07
HNF4AP41235 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC14.64□□□□□ -0.07
HNF4AP41235 AL137783.1-201ENST00000623494 1896 ntBASIC14.64□□□□□ -0.07
HNF4AP41235 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC14.64□□□□□ -0.07
HNF4AP41235 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC14.64□□□□□ -0.07
HNF4AP41235 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HNF4AP41235 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HNF4AP41235 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC14.64□□□□□ -0.07
HNF4AP41235 RN7SL692P-201ENST00000464677 288 ntBASIC14.64□□□□□ -0.07
HNF4AP41235 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC14.64□□□□□ -0.07
HNF4AP41235 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HNF4AP41235 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC14.64□□□□□ -0.07
HNF4AP41235 AP005018.1-201ENST00000525475 301 ntBASIC14.64□□□□□ -0.07
HNF4AP41235 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC14.64□□□□□ -0.07
HNF4AP41235 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC14.64□□□□□ -0.07
HNF4AP41235 PAM16-204ENST00000571941 674 ntTSL 3 BASIC14.64□□□□□ -0.07
HNF4AP41235 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC14.64□□□□□ -0.07
HNF4AP41235 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
HNF4AP41235 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC14.64□□□□□ -0.07
HNF4AP41235 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HNF4AP41235 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC14.64□□□□□ -0.07
HNF4AP41235 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC14.64□□□□□ -0.07
HNF4AP41235 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC14.64□□□□□ -0.07
HNF4AP41235 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
HNF4AP41235 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC14.64□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms