Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SMARCA1P28370 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
SMARCA1P28370 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SMARCA1P28370 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
SMARCA1P28370 REXO1L6P-201ENST00000603433 1515 ntBASIC17.14■□□□□ 0.33
SMARCA1P28370 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC17.14■□□□□ 0.33
SMARCA1P28370 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SMARCA1P28370 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SMARCA1P28370 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
SMARCA1P28370 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
SMARCA1P28370 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SMARCA1P28370 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SMARCA1P28370 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC17.14■□□□□ 0.33
SMARCA1P28370 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SMARCA1P28370 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SMARCA1P28370 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SMARCA1P28370 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
SMARCA1P28370 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
SMARCA1P28370 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
SMARCA1P28370 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SMARCA1P28370 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SMARCA1P28370 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SMARCA1P28370 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SMARCA1P28370 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
SMARCA1P28370 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SMARCA1P28370 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC17.13■□□□□ 0.33
SMARCA1P28370 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SMARCA1P28370 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SMARCA1P28370 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC17.13■□□□□ 0.33
SMARCA1P28370 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
SMARCA1P28370 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SMARCA1P28370 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC17.13■□□□□ 0.33
SMARCA1P28370 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SMARCA1P28370 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SMARCA1P28370 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SMARCA1P28370 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SMARCA1P28370 POM121L10P-201ENST00000436994 1285 ntBASIC17.13■□□□□ 0.33
SMARCA1P28370 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC17.13■□□□□ 0.33
SMARCA1P28370 CICP12-201ENST00000455801 843 ntBASIC17.13■□□□□ 0.33
SMARCA1P28370 ATP6V0CP2-201ENST00000469409 207 ntBASIC17.13■□□□□ 0.33
SMARCA1P28370 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SMARCA1P28370 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
SMARCA1P28370 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SMARCA1P28370 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC17.13■□□□□ 0.33
SMARCA1P28370 RIT1-205ENST00000539040 919 ntTSL 2 BASIC17.13■□□□□ 0.33
SMARCA1P28370 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SMARCA1P28370 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC17.13■□□□□ 0.33
SMARCA1P28370 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC17.13■□□□□ 0.33
SMARCA1P28370 AC132192.2-201ENST00000596206 1147 ntBASIC17.13■□□□□ 0.33
SMARCA1P28370 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC17.13■□□□□ 0.33
SMARCA1P28370 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SMARCA1P28370 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC17.13■□□□□ 0.33
SMARCA1P28370 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SMARCA1P28370 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SMARCA1P28370 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SMARCA1P28370 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
SMARCA1P28370 AC139712.1-201ENST00000378256 1875 ntBASIC17.13■□□□□ 0.33
SMARCA1P28370 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SMARCA1P28370 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SMARCA1P28370 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SMARCA1P28370 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SMARCA1P28370 AL354702.1-201ENST00000442006 1960 ntBASIC17.13■□□□□ 0.33
SMARCA1P28370 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SMARCA1P28370 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SMARCA1P28370 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SMARCA1P28370 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
SMARCA1P28370 SLC9A7P1-201ENST00000554295 3311 ntBASIC17.13■□□□□ 0.33
SMARCA1P28370 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
SMARCA1P28370 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMARCA1P28370 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC17.12■□□□□ 0.33
SMARCA1P28370 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC17.12■□□□□ 0.33
SMARCA1P28370 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMARCA1P28370 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SMARCA1P28370 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMARCA1P28370 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SMARCA1P28370 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
SMARCA1P28370 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMARCA1P28370 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC17.12■□□□□ 0.33
SMARCA1P28370 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMARCA1P28370 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMARCA1P28370 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMARCA1P28370 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC17.12■□□□□ 0.33
SMARCA1P28370 PTPA-215ENST00000432124 567 ntTSL 4 BASIC17.12■□□□□ 0.33
SMARCA1P28370 AC007274.1-201ENST00000439805 662 ntBASIC17.12■□□□□ 0.33
SMARCA1P28370 PFN1P12-201ENST00000455938 534 ntBASIC17.12■□□□□ 0.33
SMARCA1P28370 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC17.12■□□□□ 0.33
SMARCA1P28370 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC17.12■□□□□ 0.33
SMARCA1P28370 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
SMARCA1P28370 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC17.12■□□□□ 0.33
SMARCA1P28370 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC17.12■□□□□ 0.33
SMARCA1P28370 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC17.12■□□□□ 0.33
SMARCA1P28370 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC17.12■□□□□ 0.33
SMARCA1P28370 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC17.12■□□□□ 0.33
SMARCA1P28370 DIO1-215ENST00000610607 796 ntTSL 5 BASIC17.12■□□□□ 0.33
SMARCA1P28370 AL096828.3-201ENST00000615354 462 ntBASIC17.12■□□□□ 0.33
SMARCA1P28370 AL162426.1-201ENST00000624141 743 ntBASIC17.12■□□□□ 0.33
SMARCA1P28370 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC17.12■□□□□ 0.33
SMARCA1P28370 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC17.12■□□□□ 0.33
SMARCA1P28370 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMARCA1P28370 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms