Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
HLA-DMBP28068 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
HLA-DMBP28068 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
HLA-DMBP28068 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
HLA-DMBP28068 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
HLA-DMBP28068 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC11.54□□□□□ -0.56
HLA-DMBP28068 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
HLA-DMBP28068 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
HLA-DMBP28068 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC11.54□□□□□ -0.56
HLA-DMBP28068 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC11.54□□□□□ -0.56
HLA-DMBP28068 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
HLA-DMBP28068 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
HLA-DMBP28068 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
HLA-DMBP28068 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
HLA-DMBP28068 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
HLA-DMBP28068 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
HLA-DMBP28068 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC11.54□□□□□ -0.56
HLA-DMBP28068 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
HLA-DMBP28068 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC11.54□□□□□ -0.56
HLA-DMBP28068 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
HLA-DMBP28068 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC11.54□□□□□ -0.56
HLA-DMBP28068 FAM207CP-201ENST00000443486 507 ntBASIC11.54□□□□□ -0.56
HLA-DMBP28068 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC11.54□□□□□ -0.56
HLA-DMBP28068 COX20P2-201ENST00000452636 358 ntBASIC11.54□□□□□ -0.56
HLA-DMBP28068 SPDYE18-201ENST00000510091 1050 ntBASIC11.54□□□□□ -0.56
HLA-DMBP28068 TIMM17BP1-201ENST00000545713 516 ntBASIC11.54□□□□□ -0.56
HLA-DMBP28068 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC11.54□□□□□ -0.56
HLA-DMBP28068 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC11.54□□□□□ -0.56
HLA-DMBP28068 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC11.54□□□□□ -0.56
HLA-DMBP28068 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC11.54□□□□□ -0.56
HLA-DMBP28068 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC11.54□□□□□ -0.56
HLA-DMBP28068 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC11.54□□□□□ -0.56
HLA-DMBP28068 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC11.54□□□□□ -0.56
HLA-DMBP28068 TEX48-202ENST00000612244 662 ntTSL 3 BASIC11.54□□□□□ -0.56
HLA-DMBP28068 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
HLA-DMBP28068 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
HLA-DMBP28068 AL158212.4-201ENST00000624062 1286 ntBASIC11.54□□□□□ -0.56
HLA-DMBP28068 AC008761.3-201ENST00000624803 892 ntBASIC11.54□□□□□ -0.56
HLA-DMBP28068 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC11.54□□□□□ -0.56
HLA-DMBP28068 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC11.54□□□□□ -0.56
HLA-DMBP28068 RAB34-223ENST00000636154 730 ntTSL 2 BASIC11.54□□□□□ -0.56
HLA-DMBP28068 AL645728.2-202ENST00000641679 227 ntBASIC11.54□□□□□ -0.56
HLA-DMBP28068 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
HLA-DMBP28068 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
HLA-DMBP28068 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
HLA-DMBP28068 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC11.54□□□□□ -0.56
HLA-DMBP28068 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
HLA-DMBP28068 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
HLA-DMBP28068 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
HLA-DMBP28068 AC027601.5-201ENST00000624065 2482 ntBASIC11.54□□□□□ -0.56
HLA-DMBP28068 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC11.54□□□□□ -0.56
HLA-DMBP28068 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC11.54□□□□□ -0.56
HLA-DMBP28068 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC11.54□□□□□ -0.56
HLA-DMBP28068 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
HLA-DMBP28068 CACNA1I-202ENST00000402142 10004 ntAPPRIS P4 TSL 1 (best) BASIC11.54□□□□□ -0.56
HLA-DMBP28068 GRK6P1-201ENST00000400595 1711 ntBASIC11.54□□□□□ -0.56
HLA-DMBP28068 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
HLA-DMBP28068 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC11.54□□□□□ -0.56
HLA-DMBP28068 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
HLA-DMBP28068 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC11.54□□□□□ -0.56
HLA-DMBP28068 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
HLA-DMBP28068 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
HLA-DMBP28068 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
HLA-DMBP28068 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC11.54□□□□□ -0.56
HLA-DMBP28068 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
HLA-DMBP28068 AC022144.1-201ENST00000602255 1580 ntBASIC11.54□□□□□ -0.56
HLA-DMBP28068 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
HLA-DMBP28068 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC11.54□□□□□ -0.56
HLA-DMBP28068 RERG-209ENST00000546331 1383 ntTSL 2 BASIC11.54□□□□□ -0.56
HLA-DMBP28068 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
HLA-DMBP28068 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
HLA-DMBP28068 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC11.53□□□□□ -0.56
HLA-DMBP28068 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC11.53□□□□□ -0.56
HLA-DMBP28068 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC11.53□□□□□ -0.56
HLA-DMBP28068 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC11.53□□□□□ -0.56
HLA-DMBP28068 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC11.53□□□□□ -0.56
HLA-DMBP28068 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DMBP28068 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
HLA-DMBP28068 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DMBP28068 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DMBP28068 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
HLA-DMBP28068 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DMBP28068 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DMBP28068 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC11.53□□□□□ -0.56
HLA-DMBP28068 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DMBP28068 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC11.53□□□□□ -0.56
HLA-DMBP28068 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DMBP28068 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC11.53□□□□□ -0.56
HLA-DMBP28068 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC11.53□□□□□ -0.56
HLA-DMBP28068 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DMBP28068 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DMBP28068 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC11.53□□□□□ -0.56
HLA-DMBP28068 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DMBP28068 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DMBP28068 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC11.53□□□□□ -0.56
HLA-DMBP28068 AC190387.1-201ENST00000551683 408 ntBASIC11.53□□□□□ -0.56
HLA-DMBP28068 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC11.53□□□□□ -0.56
HLA-DMBP28068 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC11.53□□□□□ -0.56
HLA-DMBP28068 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DMBP28068 AC000095.1-201ENST00000603208 874 ntBASIC11.53□□□□□ -0.56
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms