Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 ID2-AS1-201ENST00000412712 953 ntTSL 5 BASIC18.32■□□□□ 0.52
COL5A3P25940 AQP7P5-201ENST00000428759 1049 ntBASIC18.32■□□□□ 0.52
COL5A3P25940 AL158166.1-201ENST00000433110 371 ntTSL 2 BASIC18.32■□□□□ 0.52
COL5A3P25940 AQP7P4-201ENST00000447083 1042 ntBASIC18.32■□□□□ 0.52
COL5A3P25940 AQP7P2-201ENST00000453967 1041 ntBASIC18.32■□□□□ 0.52
COL5A3P25940 NDUFB10P1-201ENST00000567319 521 ntBASIC18.32■□□□□ 0.52
COL5A3P25940 AC068025.1-201ENST00000577218 762 ntTSL 3 BASIC18.32■□□□□ 0.52
COL5A3P25940 NT5C-204ENST00000578337 582 ntTSL 2 BASIC18.32■□□□□ 0.52
COL5A3P25940 AC003043.1-201ENST00000588260 337 ntTSL 3 BASIC18.32■□□□□ 0.52
COL5A3P25940 CCDC113-206ENST00000616795 891 ntTSL 5 BASIC18.32■□□□□ 0.52
COL5A3P25940 AQP7P3-201ENST00000624547 1041 ntBASIC18.32■□□□□ 0.52
COL5A3P25940 CTBP2P8-201ENST00000422584 1330 ntBASIC18.31■□□□□ 0.52
COL5A3P25940 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL5A3P25940 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL5A3P25940 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL5A3P25940 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL5A3P25940 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC18.31■□□□□ 0.52
COL5A3P25940 MIR3936HG-204ENST00000621103 1793 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL5A3P25940 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
COL5A3P25940 IQCJ-201ENST00000397832 1460 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL5A3P25940 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL5A3P25940 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL5A3P25940 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL5A3P25940 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC18.31■□□□□ 0.52
COL5A3P25940 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL5A3P25940 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL5A3P25940 RPL3P2-204ENST00000413027 1203 ntBASIC18.31■□□□□ 0.52
COL5A3P25940 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL5A3P25940 AL355537.2-201ENST00000453367 375 ntTSL 2 BASIC18.31■□□□□ 0.52
COL5A3P25940 RN7SL23P-201ENST00000484055 275 ntBASIC18.31■□□□□ 0.52
COL5A3P25940 ROPN1B-203ENST00000505382 713 ntTSL 2 BASIC18.31■□□□□ 0.52
COL5A3P25940 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC18.31■□□□□ 0.52
COL5A3P25940 TMEM123-208ENST00000532161 743 ntAPPRIS ALT2 TSL 3 BASIC18.31■□□□□ 0.52
COL5A3P25940 AC140658.4-201ENST00000561990 352 ntBASIC18.31■□□□□ 0.52
COL5A3P25940 CMC2-204ENST00000562713 573 ntTSL 3 BASIC18.31■□□□□ 0.52
COL5A3P25940 CMC2-209ENST00000565108 399 ntTSL 2 BASIC18.31■□□□□ 0.52
COL5A3P25940 COX5A-205ENST00000568517 582 ntTSL 3 BASIC18.31■□□□□ 0.52
COL5A3P25940 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC18.31■□□□□ 0.52
COL5A3P25940 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL5A3P25940 FTX-216ENST00000638985 1367 ntTSL 5 BASIC18.31■□□□□ 0.52
COL5A3P25940 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
COL5A3P25940 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
COL5A3P25940 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL5A3P25940 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL5A3P25940 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL5A3P25940 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL5A3P25940 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC18.3■□□□□ 0.52
COL5A3P25940 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC18.3■□□□□ 0.52
COL5A3P25940 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL5A3P25940 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL5A3P25940 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL5A3P25940 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL5A3P25940 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL5A3P25940 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL5A3P25940 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC18.3■□□□□ 0.52
COL5A3P25940 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC18.3■□□□□ 0.52
COL5A3P25940 SNX3-204ENST00000426155 1072 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL5A3P25940 AL161932.2-201ENST00000435436 679 ntBASIC18.3■□□□□ 0.52
COL5A3P25940 CLNS1A-211ENST00000532069 898 ntTSL 3 BASIC18.3■□□□□ 0.52
COL5A3P25940 SHBG-210ENST00000572262 984 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL5A3P25940 ZNF286A-212ENST00000580259 527 ntTSL 4 BASIC18.3■□□□□ 0.52
COL5A3P25940 AP001269.2-201ENST00000590055 379 ntTSL 3 BASIC18.3■□□□□ 0.52
COL5A3P25940 TP53-221ENST00000615910 1149 ntTSL 5 BASIC18.3■□□□□ 0.52
COL5A3P25940 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC18.3■□□□□ 0.52
COL5A3P25940 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
COL5A3P25940 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL5A3P25940 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL5A3P25940 LCK-206ENST00000373564 2137 ntTSL 5 BASIC18.3■□□□□ 0.52
COL5A3P25940 TMEM9-202ENST00000367332 1544 ntAPPRIS ALT1 TSL 2 BASIC18.3■□□□□ 0.52
COL5A3P25940 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL5A3P25940 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC18.3■□□□□ 0.52
COL5A3P25940 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL5A3P25940 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL5A3P25940 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL5A3P25940 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL5A3P25940 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL5A3P25940 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL5A3P25940 LINC00265-2P-201ENST00000413372 782 ntBASIC18.29■□□□□ 0.52
COL5A3P25940 AC093673.1-201ENST00000429630 648 ntTSL 2 BASIC18.29■□□□□ 0.52
COL5A3P25940 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC18.29■□□□□ 0.52
COL5A3P25940 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
COL5A3P25940 DMKN-229ENST00000467637 827 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
COL5A3P25940 RPS23-207ENST00000511844 530 ntTSL 2 BASIC18.29■□□□□ 0.52
COL5A3P25940 ADM-203ENST00000525063 867 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
COL5A3P25940 AC013553.1-201ENST00000560906 267 ntBASIC18.29■□□□□ 0.52
COL5A3P25940 ZNF677-204ENST00000594681 935 ntTSL 2 BASIC18.29■□□□□ 0.52
COL5A3P25940 AL137793.2-201ENST00000632635 659 ntTSL 3 BASIC18.29■□□□□ 0.52
COL5A3P25940 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC18.29■□□□□ 0.52
COL5A3P25940 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL5A3P25940 LAMA1-209ENST00000638611 1310 ntTSL 5 BASIC18.29■□□□□ 0.52
COL5A3P25940 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL5A3P25940 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC18.29■□□□□ 0.52
COL5A3P25940 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
COL5A3P25940 FGD4-203ENST00000472289 1629 ntTSL 2 BASIC18.29■□□□□ 0.52
COL5A3P25940 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
COL5A3P25940 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL5A3P25940 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL5A3P25940 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL5A3P25940 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC18.29■□□□□ 0.52
COL5A3P25940 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms