Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 RAC2-204ENST00000406508 893 ntTSL 5 BASIC14.34□□□□□ -0.11
SDC1P18827 AC098850.1-201ENST00000419919 790 ntBASIC14.34□□□□□ -0.11
SDC1P18827 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
SDC1P18827 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
SDC1P18827 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC14.34□□□□□ -0.11
SDC1P18827 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SDC1P18827 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC14.34□□□□□ -0.11
SDC1P18827 AC092552.1-201ENST00000547243 906 ntBASIC14.34□□□□□ -0.11
SDC1P18827 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SDC1P18827 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SDC1P18827 AC008761.3-201ENST00000624803 892 ntBASIC14.34□□□□□ -0.11
SDC1P18827 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC14.34□□□□□ -0.11
SDC1P18827 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
SDC1P18827 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
SDC1P18827 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SDC1P18827 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SDC1P18827 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
SDC1P18827 AL928921.2-201ENST00000641325 2442 ntBASIC14.34□□□□□ -0.11
SDC1P18827 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SDC1P18827 AC041040.2-201ENST00000622926 2899 ntBASIC14.34□□□□□ -0.11
SDC1P18827 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SDC1P18827 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SDC1P18827 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC14.34□□□□□ -0.11
SDC1P18827 TDG-209ENST00000544861 1387 ntTSL 2 BASIC14.34□□□□□ -0.11
SDC1P18827 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SDC1P18827 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SDC1P18827 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
SDC1P18827 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SDC1P18827 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
SDC1P18827 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
SDC1P18827 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
SDC1P18827 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
SDC1P18827 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC14.33□□□□□ -0.11
SDC1P18827 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
SDC1P18827 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SDC1P18827 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC14.33□□□□□ -0.12
SDC1P18827 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
SDC1P18827 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SDC1P18827 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC14.33□□□□□ -0.12
SDC1P18827 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SDC1P18827 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SDC1P18827 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
SDC1P18827 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SDC1P18827 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SDC1P18827 B9D1-203ENST00000395615 805 ntTSL 3 BASIC14.33□□□□□ -0.12
SDC1P18827 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
SDC1P18827 KLF2P2-201ENST00000416807 1039 ntBASIC14.33□□□□□ -0.12
SDC1P18827 SOCS2P1-201ENST00000417727 557 ntBASIC14.33□□□□□ -0.12
SDC1P18827 PMS2P2-201ENST00000425039 1128 ntBASIC14.33□□□□□ -0.12
SDC1P18827 HNRNPA1P40-201ENST00000426371 1278 ntBASIC14.33□□□□□ -0.12
SDC1P18827 EIF3FP3-201ENST00000434851 1086 ntBASIC14.33□□□□□ -0.12
SDC1P18827 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC14.33□□□□□ -0.12
SDC1P18827 AC114812.1-204ENST00000449669 728 ntBASIC14.33□□□□□ -0.12
SDC1P18827 AC092183.1-201ENST00000469884 875 ntBASIC14.33□□□□□ -0.12
SDC1P18827 CYMP-203ENST00000474680 1263 ntBASIC14.33□□□□□ -0.12
SDC1P18827 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC14.33□□□□□ -0.12
SDC1P18827 RNA5SP421-201ENST00000516864 134 ntBASIC14.33□□□□□ -0.12
SDC1P18827 AC123567.1-201ENST00000548294 1261 ntBASIC14.33□□□□□ -0.12
SDC1P18827 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC14.33□□□□□ -0.12
SDC1P18827 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
SDC1P18827 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC14.33□□□□□ -0.12
SDC1P18827 AC009118.2-201ENST00000613275 655 ntBASIC14.33□□□□□ -0.12
SDC1P18827 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC14.33□□□□□ -0.12
SDC1P18827 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC14.33□□□□□ -0.12
SDC1P18827 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC14.33□□□□□ -0.12
SDC1P18827 MVK-214ENST00000629016 1591 ntTSL 5 BASIC14.33□□□□□ -0.12
SDC1P18827 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC14.33□□□□□ -0.12
SDC1P18827 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SDC1P18827 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC14.33□□□□□ -0.12
SDC1P18827 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SDC1P18827 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
SDC1P18827 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
SDC1P18827 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC14.32□□□□□ -0.12
SDC1P18827 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SDC1P18827 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
SDC1P18827 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SDC1P18827 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SDC1P18827 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SDC1P18827 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC14.32□□□□□ -0.12
SDC1P18827 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC14.32□□□□□ -0.12
SDC1P18827 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
SDC1P18827 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SDC1P18827 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC14.32□□□□□ -0.12
SDC1P18827 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SDC1P18827 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
SDC1P18827 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SDC1P18827 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC14.32□□□□□ -0.12
SDC1P18827 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
SDC1P18827 RPS15-201ENST00000233609 534 ntTSL 2 BASIC14.32□□□□□ -0.12
SDC1P18827 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SDC1P18827 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SDC1P18827 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SDC1P18827 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
SDC1P18827 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
SDC1P18827 GGCT-205ENST00000409436 954 ntTSL 3 BASIC14.32□□□□□ -0.12
SDC1P18827 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC14.32□□□□□ -0.12
SDC1P18827 DFFBP1-201ENST00000433250 979 ntBASIC14.32□□□□□ -0.12
SDC1P18827 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
SDC1P18827 GALT-202ENST00000450095 1280 ntTSL 2 BASIC14.32□□□□□ -0.12
SDC1P18827 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 79 ms