Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
ABCA1O95477 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
ABCA1O95477 HIPK1-205ENST00000369558 8157 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
ABCA1O95477 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
ABCA1O95477 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
ABCA1O95477 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC12.69□□□□□ -0.38
ABCA1O95477 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
ABCA1O95477 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA1O95477 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
ABCA1O95477 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
ABCA1O95477 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA1O95477 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA1O95477 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC12.68□□□□□ -0.38
ABCA1O95477 GFRA1-204ENST00000439649 9216 ntAPPRIS P3 TSL 2 BASIC12.68□□□□□ -0.38
ABCA1O95477 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC12.68□□□□□ -0.38
ABCA1O95477 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA1O95477 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA1O95477 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC12.68□□□□□ -0.38
ABCA1O95477 CD8B2-202ENST00000417670 633 ntBASIC12.68□□□□□ -0.38
ABCA1O95477 FAM8A4P-201ENST00000435433 1213 ntBASIC12.68□□□□□ -0.38
ABCA1O95477 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC12.68□□□□□ -0.38
ABCA1O95477 AC022217.1-201ENST00000521069 738 ntBASIC12.68□□□□□ -0.38
ABCA1O95477 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA1O95477 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC12.68□□□□□ -0.38
ABCA1O95477 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC12.68□□□□□ -0.38
ABCA1O95477 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC12.68□□□□□ -0.38
ABCA1O95477 U62317.3-201ENST00000608319 855 ntBASIC12.68□□□□□ -0.38
ABCA1O95477 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC12.68□□□□□ -0.38
ABCA1O95477 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA1O95477 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA1O95477 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC12.68□□□□□ -0.38
ABCA1O95477 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA1O95477 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA1O95477 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA1O95477 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA1O95477 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC12.68□□□□□ -0.38
ABCA1O95477 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA1O95477 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA1O95477 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC12.68□□□□□ -0.38
ABCA1O95477 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA1O95477 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA1O95477 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA1O95477 PPT1-215ENST00000641471 2368 ntBASIC12.68□□□□□ -0.38
ABCA1O95477 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA1O95477 FES-204ENST00000414248 2327 ntTSL 2 BASIC12.68□□□□□ -0.38
ABCA1O95477 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA1O95477 MPV17-205ENST00000402310 906 ntTSL 5 BASIC12.68□□□□□ -0.38
ABCA1O95477 AL354877.1-201ENST00000424412 413 ntBASIC12.68□□□□□ -0.38
ABCA1O95477 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA1O95477 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC12.68□□□□□ -0.38
ABCA1O95477 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA1O95477 AC134698.3-201ENST00000523880 214 ntBASIC12.68□□□□□ -0.38
ABCA1O95477 FGFR3P5-201ENST00000564496 886 ntBASIC12.68□□□□□ -0.38
ABCA1O95477 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC12.68□□□□□ -0.38
ABCA1O95477 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC12.68□□□□□ -0.38
ABCA1O95477 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA1O95477 NKG7-204ENST00000595217 816 ntTSL 2 BASIC12.68□□□□□ -0.38
ABCA1O95477 AC244452.3-201ENST00000636814 210 ntBASIC12.68□□□□□ -0.38
ABCA1O95477 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA1O95477 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA1O95477 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA1O95477 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC12.68□□□□□ -0.38
ABCA1O95477 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC12.68□□□□□ -0.38
ABCA1O95477 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA1O95477 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
ABCA1O95477 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA1O95477 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC12.68□□□□□ -0.38
ABCA1O95477 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA1O95477 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
ABCA1O95477 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
ABCA1O95477 POLL-217ENST00000628479 1953 ntTSL 5 BASIC12.67□□□□□ -0.38
ABCA1O95477 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
ABCA1O95477 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC12.67□□□□□ -0.38
ABCA1O95477 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
ABCA1O95477 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC12.67□□□□□ -0.38
ABCA1O95477 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
ABCA1O95477 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC12.67□□□□□ -0.38
ABCA1O95477 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
ABCA1O95477 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
ABCA1O95477 PARVG-202ENST00000415224 999 ntTSL 2 BASIC12.67□□□□□ -0.38
ABCA1O95477 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC12.67□□□□□ -0.38
ABCA1O95477 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC12.67□□□□□ -0.38
ABCA1O95477 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
ABCA1O95477 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
ABCA1O95477 UBL5-208ENST00000593087 320 ntTSL 3 BASIC12.67□□□□□ -0.38
ABCA1O95477 ZACNP1-201ENST00000612259 710 ntBASIC12.67□□□□□ -0.38
ABCA1O95477 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC12.67□□□□□ -0.38
ABCA1O95477 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
ABCA1O95477 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
ABCA1O95477 PCDHA3-202ENST00000532566 4594 ntBASIC12.67□□□□□ -0.38
ABCA1O95477 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC12.67□□□□□ -0.38
ABCA1O95477 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC12.67□□□□□ -0.38
ABCA1O95477 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
ABCA1O95477 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC12.67□□□□□ -0.38
ABCA1O95477 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC12.67□□□□□ -0.38
ABCA1O95477 AC069224.1-201ENST00000566372 1715 ntBASIC12.67□□□□□ -0.38
ABCA1O95477 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC12.67□□□□□ -0.38
ABCA1O95477 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
ABCA1O95477 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
ABCA1O95477 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 85.6 ms