Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 BCL2-201ENST00000333681 3209 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SHOX2O60902 Z98257.2-202ENST00000641138 1548 ntBASIC15.07■□□□□ 0
SHOX2O60902 SLC29A4-201ENST00000297195 2839 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SHOX2O60902 GPA33-201ENST00000367868 2802 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SHOX2O60902 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC15.07■□□□□ 0
SHOX2O60902 RGS3-205ENST00000374134 2862 ntTSL 1 (best) BASIC15.07■□□□□ 0
SHOX2O60902 AC125807.2-201ENST00000513358 3514 ntBASIC15.06■□□□□ 0
SHOX2O60902 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SHOX2O60902 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SHOX2O60902 API5-203ENST00000455725 2257 ntTSL 2 BASIC15.06■□□□□ 0
SHOX2O60902 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC15.06■□□□□ 0
SHOX2O60902 AP001972.5-201ENST00000624624 2338 ntBASIC15.06■□□□□ 0
SHOX2O60902 BCKDHB-201ENST00000320393 3692 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SHOX2O60902 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SHOX2O60902 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SHOX2O60902 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
SHOX2O60902 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC15.06■□□□□ 0
SHOX2O60902 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC15.06■□□□□ 0
SHOX2O60902 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC15.06■□□□□ 0
SHOX2O60902 ZFAND3-201ENST00000287218 3366 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SHOX2O60902 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SHOX2O60902 ASB2-201ENST00000315988 2743 ntTSL 1 (best) BASIC15.06■□□□□ 0
SHOX2O60902 PDE9A-202ENST00000328862 1956 ntTSL 1 (best) BASIC15.06■□□□□ 0
SHOX2O60902 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC15.06■□□□□ 0
SHOX2O60902 PTPN5-203ENST00000396168 2796 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SHOX2O60902 C14orf39-201ENST00000321731 2813 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SHOX2O60902 FES-201ENST00000328850 2829 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SHOX2O60902 CNN2-202ENST00000348419 2033 ntTSL 2 BASIC15.06■□□□□ 0
SHOX2O60902 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC15.06■□□□□ 0
SHOX2O60902 ITGB2-201ENST00000302347 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SHOX2O60902 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SHOX2O60902 FAM220BP-201ENST00000377689 816 ntBASIC15.06■□□□□ 0
SHOX2O60902 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
SHOX2O60902 KRT18P67-201ENST00000432816 1264 ntBASIC15.06■□□□□ 0
SHOX2O60902 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC15.06■□□□□ 0
SHOX2O60902 PRSS29P-201ENST00000440800 595 ntBASIC15.06■□□□□ 0
SHOX2O60902 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC15.06■□□□□ 0
SHOX2O60902 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
SHOX2O60902 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC15.06■□□□□ 0
SHOX2O60902 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC15.06■□□□□ 0
SHOX2O60902 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC15.06■□□□□ 0
SHOX2O60902 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SHOX2O60902 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC15.06■□□□□ 0
SHOX2O60902 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC15.06■□□□□ 0
SHOX2O60902 TBCB-211ENST00000589996 724 ntTSL 3 BASIC15.06■□□□□ 0
SHOX2O60902 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC15.06■□□□□ 0
SHOX2O60902 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC15.06■□□□□ 0
SHOX2O60902 AL121912.1-201ENST00000603683 238 ntBASIC15.06■□□□□ 0
SHOX2O60902 FAM215A-202ENST00000632077 792 ntBASIC15.06■□□□□ 0
SHOX2O60902 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC15.06■□□□□ 0
SHOX2O60902 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SHOX2O60902 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
SHOX2O60902 AGAP12P-201ENST00000585227 2359 ntBASIC15.06■□□□□ 0
SHOX2O60902 GLB1L-202ENST00000392089 2574 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SHOX2O60902 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC15.06■□□□□ 0
SHOX2O60902 KRT33B-201ENST00000251646 1607 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SHOX2O60902 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC15.06■□□□□ 0
SHOX2O60902 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC15.06■□□□□ 0
SHOX2O60902 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC15.06■□□□□ 0
SHOX2O60902 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
SHOX2O60902 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC15.05■□□□□ 0
SHOX2O60902 AC087386.2-201ENST00000623212 4637 ntBASIC15.05■□□□□ 0
SHOX2O60902 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC15.05■□□□□ 0
SHOX2O60902 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC15.05■□□□□ 0
SHOX2O60902 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ 0
SHOX2O60902 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
SHOX2O60902 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ 0
SHOX2O60902 EML1-203ENST00000334192 4064 ntTSL 5 BASIC15.05■□□□□ 0
SHOX2O60902 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC15.05■□□□□ 0
SHOX2O60902 CALD1-205ENST00000422748 2665 ntTSL 2 BASIC15.05■□□□□ 0
SHOX2O60902 TRIB2-202ENST00000381465 2778 ntTSL 2 BASIC15.05■□□□□ 0
SHOX2O60902 EGR2-202ENST00000411732 2824 ntTSL 2 BASIC15.05■□□□□ 0
SHOX2O60902 ATG4C-201ENST00000317868 2938 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
SHOX2O60902 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
SHOX2O60902 PNKD-203ENST00000273077 3021 ntAPPRIS P4 TSL 1 (best) BASIC15.05■□□□□ 0
SHOX2O60902 NEXN-201ENST00000330010 3195 ntTSL 2 BASIC15.05■□□□□ -0
SHOX2O60902 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
SHOX2O60902 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
SHOX2O60902 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
SHOX2O60902 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
SHOX2O60902 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC15.05■□□□□ -0
SHOX2O60902 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC15.05■□□□□ -0
SHOX2O60902 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
SHOX2O60902 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC15.05■□□□□ -0
SHOX2O60902 AC079781.3-201ENST00000449110 356 ntBASIC15.05■□□□□ -0
SHOX2O60902 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC15.05■□□□□ -0
SHOX2O60902 AC108751.1-201ENST00000490852 363 ntBASIC15.05■□□□□ -0
SHOX2O60902 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
SHOX2O60902 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC15.05■□□□□ -0
SHOX2O60902 RNA5SP410-201ENST00000516285 106 ntBASIC15.05■□□□□ -0
SHOX2O60902 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC15.05■□□□□ -0
SHOX2O60902 MIR6074-201ENST00000612054 107 ntBASIC15.05■□□□□ -0
SHOX2O60902 SLC16A1-201ENST00000369626 3910 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
SHOX2O60902 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
SHOX2O60902 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
SHOX2O60902 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC15.05■□□□□ -0
SHOX2O60902 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
SHOX2O60902 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC15.05■□□□□ -0
SHOX2O60902 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC15.05■□□□□ -0
SHOX2O60902 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC15.05■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 75.2 ms