Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC15.1■□□□□ 0.01
VPS9D1Q9Y2B5 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC15.1■□□□□ 0.01
VPS9D1Q9Y2B5 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
VPS9D1Q9Y2B5 CALY-202ENST00000368555 783 ntTSL 2 BASIC15.1■□□□□ 0.01
VPS9D1Q9Y2B5 TRMT13-201ENST00000370139 711 ntTSL 3 BASIC15.1■□□□□ 0.01
VPS9D1Q9Y2B5 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
VPS9D1Q9Y2B5 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC15.1■□□□□ 0.01
VPS9D1Q9Y2B5 MTND2P11-201ENST00000423638 648 ntBASIC15.1■□□□□ 0.01
VPS9D1Q9Y2B5 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC15.1■□□□□ 0.01
VPS9D1Q9Y2B5 ADAM3A-209ENST00000497806 1245 ntTSL 5 BASIC15.1■□□□□ 0.01
VPS9D1Q9Y2B5 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC15.1■□□□□ 0.01
VPS9D1Q9Y2B5 LINC02429-202ENST00000513836 694 ntTSL 3 BASIC15.1■□□□□ 0.01
VPS9D1Q9Y2B5 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC15.1■□□□□ 0.01
VPS9D1Q9Y2B5 AC124283.3-201ENST00000570869 594 ntBASIC15.1■□□□□ 0.01
VPS9D1Q9Y2B5 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC15.1■□□□□ 0.01
VPS9D1Q9Y2B5 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
VPS9D1Q9Y2B5 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC15.1■□□□□ 0.01
VPS9D1Q9Y2B5 TCEAL4-213ENST00000613326 1166 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
VPS9D1Q9Y2B5 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC15.1■□□□□ 0.01
VPS9D1Q9Y2B5 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC15.1■□□□□ 0.01
VPS9D1Q9Y2B5 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
VPS9D1Q9Y2B5 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
VPS9D1Q9Y2B5 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS9D1Q9Y2B5 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS9D1Q9Y2B5 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC15.1■□□□□ 0.01
VPS9D1Q9Y2B5 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC15.1■□□□□ 0.01
VPS9D1Q9Y2B5 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS9D1Q9Y2B5 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS9D1Q9Y2B5 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
VPS9D1Q9Y2B5 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS9D1Q9Y2B5 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS9D1Q9Y2B5 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS9D1Q9Y2B5 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS9D1Q9Y2B5 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
VPS9D1Q9Y2B5 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS9D1Q9Y2B5 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS9D1Q9Y2B5 SF1-209ENST00000433274 2317 ntTSL 2 BASIC15.1■□□□□ 0.01
VPS9D1Q9Y2B5 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS9D1Q9Y2B5 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
VPS9D1Q9Y2B5 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
VPS9D1Q9Y2B5 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
VPS9D1Q9Y2B5 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS9D1Q9Y2B5 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS9D1Q9Y2B5 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
VPS9D1Q9Y2B5 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS9D1Q9Y2B5 HNRNPA1P48-201ENST00000562726 1377 ntBASIC15.1■□□□□ 0.01
VPS9D1Q9Y2B5 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC15.1■□□□□ 0.01
VPS9D1Q9Y2B5 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
VPS9D1Q9Y2B5 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 CICP14-201ENST00000629111 2732 ntBASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 AL157414.3-201ENST00000624276 1954 ntBASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 AGER-206ENST00000375070 1463 ntTSL 5 BASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 AC232323.1-201ENST00000540724 2099 ntBASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 REXO1L5P-201ENST00000622260 2098 ntBASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 MPI-203ENST00000535694 1523 ntTSL 2 BASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 MYCLP2-201ENST00000449268 967 ntBASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 AC022616.1-201ENST00000518688 554 ntBASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 IFT20-206ENST00000578122 834 ntTSL 2 BASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 IFT20-208ENST00000578985 831 ntTSL 3 BASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 RPS15-202ENST00000585665 467 ntTSL 3 BASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 AC008761.3-201ENST00000624803 892 ntBASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 CASC19-229ENST00000641418 1373 ntBASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
VPS9D1Q9Y2B5 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms