Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 TNS2-219ENST00000552570 4714 ntAPPRIS ALT2 TSL 5 BASIC11.34□□□□□ -0.59
LINC00477Q96M19 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC11.34□□□□□ -0.59
LINC00477Q96M19 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC11.34□□□□□ -0.59
LINC00477Q96M19 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC11.34□□□□□ -0.59
LINC00477Q96M19 PPFIA4-203ENST00000367240 6434 ntAPPRIS P5 TSL 5 BASIC11.34□□□□□ -0.59
LINC00477Q96M19 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
LINC00477Q96M19 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC11.34□□□□□ -0.59
LINC00477Q96M19 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
LINC00477Q96M19 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC11.34□□□□□ -0.59
LINC00477Q96M19 VGLL3-202ENST00000398399 10400 ntAPPRIS P3 TSL 1 (best) BASIC11.34□□□□□ -0.59
LINC00477Q96M19 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC11.34□□□□□ -0.59
LINC00477Q96M19 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
LINC00477Q96M19 PTENP1-202ENST00000532280 3996 ntBASIC11.34□□□□□ -0.59
LINC00477Q96M19 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC11.34□□□□□ -0.59
LINC00477Q96M19 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC11.34□□□□□ -0.59
LINC00477Q96M19 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
LINC00477Q96M19 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC11.34□□□□□ -0.59
LINC00477Q96M19 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
LINC00477Q96M19 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC11.34□□□□□ -0.59
LINC00477Q96M19 MYO16-203ENST00000357550 6779 ntAPPRIS P3 TSL 1 (best) BASIC11.34□□□□□ -0.59
LINC00477Q96M19 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
LINC00477Q96M19 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
LINC00477Q96M19 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
LINC00477Q96M19 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
LINC00477Q96M19 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC11.34□□□□□ -0.59
LINC00477Q96M19 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
LINC00477Q96M19 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC11.34□□□□□ -0.59
LINC00477Q96M19 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC11.34□□□□□ -0.59
LINC00477Q96M19 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC11.34□□□□□ -0.59
LINC00477Q96M19 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
LINC00477Q96M19 DNAJB3-202ENST00000449667 1266 ntBASIC11.34□□□□□ -0.59
LINC00477Q96M19 GAPDHP40-201ENST00000505218 1006 ntBASIC11.34□□□□□ -0.59
LINC00477Q96M19 AC097493.3-201ENST00000509725 367 ntBASIC11.34□□□□□ -0.59
LINC00477Q96M19 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
LINC00477Q96M19 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC11.34□□□□□ -0.59
LINC00477Q96M19 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC11.34□□□□□ -0.59
LINC00477Q96M19 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC11.34□□□□□ -0.59
LINC00477Q96M19 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC11.34□□□□□ -0.59
LINC00477Q96M19 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC11.34□□□□□ -0.59
LINC00477Q96M19 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC11.34□□□□□ -0.59
LINC00477Q96M19 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC11.34□□□□□ -0.59
LINC00477Q96M19 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC11.34□□□□□ -0.59
LINC00477Q96M19 LSM12-202ENST00000585388 942 ntTSL 3 BASIC11.34□□□□□ -0.59
LINC00477Q96M19 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC11.34□□□□□ -0.59
LINC00477Q96M19 AL844908.2-201ENST00000609461 460 ntBASIC11.34□□□□□ -0.59
LINC00477Q96M19 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
LINC00477Q96M19 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC11.34□□□□□ -0.59
LINC00477Q96M19 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC11.34□□□□□ -0.59
LINC00477Q96M19 AL590560.3-201ENST00000623350 461 ntBASIC11.34□□□□□ -0.59
LINC00477Q96M19 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC11.34□□□□□ -0.59
LINC00477Q96M19 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC11.34□□□□□ -0.59
LINC00477Q96M19 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
LINC00477Q96M19 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
LINC00477Q96M19 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
LINC00477Q96M19 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
LINC00477Q96M19 NHLH2-202ENST00000369506 7226 ntAPPRIS P1 BASIC11.34□□□□□ -0.59
LINC00477Q96M19 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC11.34□□□□□ -0.59
LINC00477Q96M19 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC11.34□□□□□ -0.59
LINC00477Q96M19 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC11.34□□□□□ -0.59
LINC00477Q96M19 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
LINC00477Q96M19 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC11.34□□□□□ -0.59
LINC00477Q96M19 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC11.34□□□□□ -0.59
LINC00477Q96M19 AC015802.1-201ENST00000588104 1449 ntBASIC11.34□□□□□ -0.59
LINC00477Q96M19 GALNT4-201ENST00000529983 5399 ntAPPRIS P1 BASIC11.34□□□□□ -0.59
LINC00477Q96M19 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
LINC00477Q96M19 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC11.34□□□□□ -0.59
LINC00477Q96M19 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC11.34□□□□□ -0.59
LINC00477Q96M19 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC11.34□□□□□ -0.59
LINC00477Q96M19 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC11.33□□□□□ -0.59
LINC00477Q96M19 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC11.33□□□□□ -0.59
LINC00477Q96M19 AC055811.4-201ENST00000624039 1754 ntBASIC11.33□□□□□ -0.59
LINC00477Q96M19 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC11.33□□□□□ -0.59
LINC00477Q96M19 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.59
LINC00477Q96M19 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC11.33□□□□□ -0.59
LINC00477Q96M19 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC11.33□□□□□ -0.59
LINC00477Q96M19 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00477Q96M19 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00477Q96M19 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00477Q96M19 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00477Q96M19 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC11.33□□□□□ -0.6
LINC00477Q96M19 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC11.33□□□□□ -0.6
LINC00477Q96M19 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00477Q96M19 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00477Q96M19 OAS3-201ENST00000228928 6719 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00477Q96M19 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00477Q96M19 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00477Q96M19 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC11.33□□□□□ -0.6
LINC00477Q96M19 MROH2A-201ENST00000389758 5355 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
LINC00477Q96M19 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00477Q96M19 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC11.33□□□□□ -0.6
LINC00477Q96M19 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00477Q96M19 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00477Q96M19 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00477Q96M19 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC11.33□□□□□ -0.6
LINC00477Q96M19 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC11.33□□□□□ -0.6
LINC00477Q96M19 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC11.33□□□□□ -0.6
LINC00477Q96M19 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00477Q96M19 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC11.33□□□□□ -0.6
LINC00477Q96M19 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC11.33□□□□□ -0.6
LINC00477Q96M19 AC241585.1-201ENST00000433527 519 ntBASIC11.33□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms