Protein–RNA interactions for Protein: Q96K76

USP47, Ubiquitin carboxyl-terminal hydrolase 47, humanhuman

Predictions only

Length 1,375 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP47Q96K76 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
USP47Q96K76 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
USP47Q96K76 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC20.89■□□□□ 0.93
USP47Q96K76 AP002414.2-201ENST00000591780 3365 ntBASIC20.89■□□□□ 0.93
USP47Q96K76 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC20.89■□□□□ 0.93
USP47Q96K76 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
USP47Q96K76 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC20.89■□□□□ 0.93
USP47Q96K76 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC20.89■□□□□ 0.93
USP47Q96K76 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
USP47Q96K76 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
USP47Q96K76 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
USP47Q96K76 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
USP47Q96K76 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
USP47Q96K76 AC106881.1-201ENST00000605849 3329 ntBASIC20.89■□□□□ 0.93
USP47Q96K76 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
USP47Q96K76 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
USP47Q96K76 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
USP47Q96K76 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC20.88■□□□□ 0.93
USP47Q96K76 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
USP47Q96K76 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
USP47Q96K76 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP47Q96K76 COCH-203ENST00000460581 2688 ntTSL 2 BASIC20.88■□□□□ 0.93
USP47Q96K76 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP47Q96K76 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP47Q96K76 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
USP47Q96K76 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP47Q96K76 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP47Q96K76 RBM38-204ENST00000371219 760 ntTSL 2 BASIC20.88■□□□□ 0.93
USP47Q96K76 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC20.88■□□□□ 0.93
USP47Q96K76 AL354877.1-201ENST00000424412 413 ntBASIC20.88■□□□□ 0.93
USP47Q96K76 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC20.88■□□□□ 0.93
USP47Q96K76 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC20.88■□□□□ 0.93
USP47Q96K76 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC20.88■□□□□ 0.93
USP47Q96K76 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC20.88■□□□□ 0.93
USP47Q96K76 AC132192.2-201ENST00000596206 1147 ntBASIC20.88■□□□□ 0.93
USP47Q96K76 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
USP47Q96K76 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP47Q96K76 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
USP47Q96K76 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
USP47Q96K76 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC20.88■□□□□ 0.93
USP47Q96K76 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP47Q96K76 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP47Q96K76 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC20.87■□□□□ 0.93
USP47Q96K76 E2F3P2-201ENST00000447755 1422 ntBASIC20.87■□□□□ 0.93
USP47Q96K76 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC20.87■□□□□ 0.93
USP47Q96K76 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP47Q96K76 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
USP47Q96K76 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP47Q96K76 APOC3-202ENST00000375345 604 ntTSL 5 BASIC20.87■□□□□ 0.93
USP47Q96K76 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP47Q96K76 BCYRN1-201ENST00000418539 200 ntBASIC20.87■□□□□ 0.93
USP47Q96K76 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC20.87■□□□□ 0.93
USP47Q96K76 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC20.87■□□□□ 0.93
USP47Q96K76 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC20.87■□□□□ 0.93
USP47Q96K76 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC20.87■□□□□ 0.93
USP47Q96K76 AC005730.2-201ENST00000564549 1184 ntBASIC20.87■□□□□ 0.93
USP47Q96K76 PRKN-211ENST00000615065 261 ntTSL 5 BASIC20.87■□□□□ 0.93
USP47Q96K76 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
USP47Q96K76 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP47Q96K76 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
USP47Q96K76 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC20.87■□□□□ 0.93
USP47Q96K76 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
USP47Q96K76 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
USP47Q96K76 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC20.87■□□□□ 0.93
USP47Q96K76 FES-203ENST00000394302 2133 ntTSL 5 BASIC20.87■□□□□ 0.93
USP47Q96K76 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
USP47Q96K76 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP47Q96K76 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC20.87■□□□□ 0.93
USP47Q96K76 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
USP47Q96K76 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP47Q96K76 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
USP47Q96K76 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP47Q96K76 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP47Q96K76 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
USP47Q96K76 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
USP47Q96K76 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
USP47Q96K76 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP47Q96K76 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP47Q96K76 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
USP47Q96K76 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC20.86■□□□□ 0.93
USP47Q96K76 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP47Q96K76 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
USP47Q96K76 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC20.86■□□□□ 0.93
USP47Q96K76 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC20.86■□□□□ 0.93
USP47Q96K76 AC244157.2-201ENST00000616239 1006 ntBASIC20.86■□□□□ 0.93
USP47Q96K76 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC20.86■□□□□ 0.93
USP47Q96K76 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP47Q96K76 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP47Q96K76 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
USP47Q96K76 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP47Q96K76 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP47Q96K76 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
USP47Q96K76 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC20.86■□□□□ 0.93
USP47Q96K76 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP47Q96K76 KRT8P28-201ENST00000433288 1390 ntBASIC20.86■□□□□ 0.93
USP47Q96K76 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP47Q96K76 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
USP47Q96K76 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
USP47Q96K76 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP47Q96K76 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 85.5 ms