Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VMP1Q96GC9 AC098850.1-201ENST00000419919 790 ntBASIC14.53□□□□□ -0.08
VMP1Q96GC9 AL442647.2-201ENST00000429864 857 ntBASIC14.53□□□□□ -0.08
VMP1Q96GC9 PTPA-220ENST00000436883 532 ntTSL 4 BASIC14.53□□□□□ -0.08
VMP1Q96GC9 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC14.53□□□□□ -0.08
VMP1Q96GC9 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VMP1Q96GC9 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
VMP1Q96GC9 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
VMP1Q96GC9 AC011495.1-201ENST00000498085 584 ntBASIC14.53□□□□□ -0.08
VMP1Q96GC9 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC14.53□□□□□ -0.08
VMP1Q96GC9 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC14.53□□□□□ -0.08
VMP1Q96GC9 RBM7-207ENST00000544582 692 ntTSL 3 BASIC14.53□□□□□ -0.08
VMP1Q96GC9 AC092552.1-201ENST00000547243 906 ntBASIC14.53□□□□□ -0.08
VMP1Q96GC9 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
VMP1Q96GC9 MIR8072-201ENST00000614241 80 ntBASIC14.53□□□□□ -0.08
VMP1Q96GC9 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
VMP1Q96GC9 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
VMP1Q96GC9 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC14.53□□□□□ -0.08
VMP1Q96GC9 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC14.53□□□□□ -0.08
VMP1Q96GC9 AC079781.5-202ENST00000641784 3743 ntBASIC14.53□□□□□ -0.08
VMP1Q96GC9 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC14.53□□□□□ -0.08
VMP1Q96GC9 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC14.53□□□□□ -0.08
VMP1Q96GC9 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VMP1Q96GC9 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC14.53□□□□□ -0.08
VMP1Q96GC9 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
VMP1Q96GC9 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC14.53□□□□□ -0.08
VMP1Q96GC9 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
VMP1Q96GC9 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
VMP1Q96GC9 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC14.53□□□□□ -0.08
VMP1Q96GC9 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC14.53□□□□□ -0.08
VMP1Q96GC9 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
VMP1Q96GC9 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VMP1Q96GC9 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC14.52□□□□□ -0.08
VMP1Q96GC9 AC145098.2-201ENST00000623593 3026 ntBASIC14.52□□□□□ -0.08
VMP1Q96GC9 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
VMP1Q96GC9 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
VMP1Q96GC9 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
VMP1Q96GC9 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
VMP1Q96GC9 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC14.52□□□□□ -0.08
VMP1Q96GC9 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
VMP1Q96GC9 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
VMP1Q96GC9 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC14.52□□□□□ -0.08
VMP1Q96GC9 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
VMP1Q96GC9 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
VMP1Q96GC9 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
VMP1Q96GC9 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
VMP1Q96GC9 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
VMP1Q96GC9 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
VMP1Q96GC9 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC14.52□□□□□ -0.08
VMP1Q96GC9 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
VMP1Q96GC9 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
VMP1Q96GC9 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
VMP1Q96GC9 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
VMP1Q96GC9 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
VMP1Q96GC9 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC14.52□□□□□ -0.09
VMP1Q96GC9 AC005034.1-201ENST00000426657 489 ntBASIC14.52□□□□□ -0.09
VMP1Q96GC9 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC14.52□□□□□ -0.09
VMP1Q96GC9 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC14.52□□□□□ -0.09
VMP1Q96GC9 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC14.52□□□□□ -0.09
VMP1Q96GC9 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC14.52□□□□□ -0.09
VMP1Q96GC9 CR383656.12-201ENST00000549567 513 ntBASIC14.52□□□□□ -0.09
VMP1Q96GC9 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
VMP1Q96GC9 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC14.52□□□□□ -0.09
VMP1Q96GC9 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC14.52□□□□□ -0.09
VMP1Q96GC9 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC14.52□□□□□ -0.09
VMP1Q96GC9 CTBP2P3-201ENST00000585629 1255 ntBASIC14.52□□□□□ -0.09
VMP1Q96GC9 BRI3BPP1-201ENST00000594224 787 ntBASIC14.52□□□□□ -0.09
VMP1Q96GC9 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
VMP1Q96GC9 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
VMP1Q96GC9 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
VMP1Q96GC9 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
VMP1Q96GC9 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
VMP1Q96GC9 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
VMP1Q96GC9 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
VMP1Q96GC9 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
VMP1Q96GC9 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
VMP1Q96GC9 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
VMP1Q96GC9 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
VMP1Q96GC9 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC14.52□□□□□ -0.09
VMP1Q96GC9 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
VMP1Q96GC9 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
VMP1Q96GC9 AC007686.3-201ENST00000619017 3487 ntBASIC14.51□□□□□ -0.09
VMP1Q96GC9 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
VMP1Q96GC9 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
VMP1Q96GC9 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
VMP1Q96GC9 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
VMP1Q96GC9 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
VMP1Q96GC9 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
VMP1Q96GC9 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
VMP1Q96GC9 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC14.51□□□□□ -0.09
VMP1Q96GC9 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
VMP1Q96GC9 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
VMP1Q96GC9 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
VMP1Q96GC9 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VMP1Q96GC9 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC14.51□□□□□ -0.09
VMP1Q96GC9 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
VMP1Q96GC9 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC14.51□□□□□ -0.09
VMP1Q96GC9 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VMP1Q96GC9 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VMP1Q96GC9 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 87.3 ms