Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 KRT8P14-201ENST00000414254 1442 ntBASIC15.65■□□□□ 0.1
ATG4AQ8WYN0 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
ATG4AQ8WYN0 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC15.65■□□□□ 0.1
ATG4AQ8WYN0 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
ATG4AQ8WYN0 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC15.65■□□□□ 0.1
ATG4AQ8WYN0 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
ATG4AQ8WYN0 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
ATG4AQ8WYN0 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ATG4AQ8WYN0 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC15.65■□□□□ 0.1
ATG4AQ8WYN0 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ATG4AQ8WYN0 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
ATG4AQ8WYN0 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
ATG4AQ8WYN0 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
ATG4AQ8WYN0 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ATG4AQ8WYN0 AC055811.4-201ENST00000624039 1754 ntBASIC15.64■□□□□ 0.1
ATG4AQ8WYN0 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
ATG4AQ8WYN0 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC15.64■□□□□ 0.09
ATG4AQ8WYN0 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
ATG4AQ8WYN0 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC15.64■□□□□ 0.09
ATG4AQ8WYN0 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
ATG4AQ8WYN0 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
ATG4AQ8WYN0 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
ATG4AQ8WYN0 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC15.64■□□□□ 0.09
ATG4AQ8WYN0 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
ATG4AQ8WYN0 AC055876.3-201ENST00000431496 288 ntBASIC15.64■□□□□ 0.09
ATG4AQ8WYN0 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC15.64■□□□□ 0.09
ATG4AQ8WYN0 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC15.64■□□□□ 0.09
ATG4AQ8WYN0 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC15.64■□□□□ 0.09
ATG4AQ8WYN0 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
ATG4AQ8WYN0 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC15.64■□□□□ 0.09
ATG4AQ8WYN0 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
ATG4AQ8WYN0 AC022447.6-201ENST00000515522 438 ntBASIC15.64■□□□□ 0.09
ATG4AQ8WYN0 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC15.64■□□□□ 0.09
ATG4AQ8WYN0 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC15.64■□□□□ 0.09
ATG4AQ8WYN0 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
ATG4AQ8WYN0 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC15.64■□□□□ 0.09
ATG4AQ8WYN0 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC15.64■□□□□ 0.09
ATG4AQ8WYN0 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC15.64■□□□□ 0.09
ATG4AQ8WYN0 RARRES2P5-201ENST00000564013 466 ntBASIC15.64■□□□□ 0.09
ATG4AQ8WYN0 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC15.64■□□□□ 0.09
ATG4AQ8WYN0 WDR88-203ENST00000592765 651 ntTSL 5 BASIC15.64■□□□□ 0.09
ATG4AQ8WYN0 AC138649.4-201ENST00000612222 287 ntBASIC15.64■□□□□ 0.09
ATG4AQ8WYN0 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
ATG4AQ8WYN0 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
ATG4AQ8WYN0 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
ATG4AQ8WYN0 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
ATG4AQ8WYN0 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
ATG4AQ8WYN0 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
ATG4AQ8WYN0 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
ATG4AQ8WYN0 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
ATG4AQ8WYN0 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
ATG4AQ8WYN0 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
ATG4AQ8WYN0 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
ATG4AQ8WYN0 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
ATG4AQ8WYN0 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC15.64■□□□□ 0.09
ATG4AQ8WYN0 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
ATG4AQ8WYN0 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
ATG4AQ8WYN0 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
ATG4AQ8WYN0 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC15.63■□□□□ 0.09
ATG4AQ8WYN0 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
ATG4AQ8WYN0 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
ATG4AQ8WYN0 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
ATG4AQ8WYN0 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC15.63■□□□□ 0.09
ATG4AQ8WYN0 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
ATG4AQ8WYN0 AC010327.5-201ENST00000586923 3061 ntBASIC15.63■□□□□ 0.09
ATG4AQ8WYN0 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
ATG4AQ8WYN0 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
ATG4AQ8WYN0 KCP-203ENST00000610776 5108 ntTSL 5 BASIC15.63■□□□□ 0.09
ATG4AQ8WYN0 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC15.63■□□□□ 0.09
ATG4AQ8WYN0 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
ATG4AQ8WYN0 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
ATG4AQ8WYN0 LBH-203ENST00000404397 543 ntTSL 4 BASIC15.63■□□□□ 0.09
ATG4AQ8WYN0 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC15.63■□□□□ 0.09
ATG4AQ8WYN0 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
ATG4AQ8WYN0 TMPRSS11CP-201ENST00000453277 683 ntBASIC15.63■□□□□ 0.09
ATG4AQ8WYN0 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC15.63■□□□□ 0.09
ATG4AQ8WYN0 TPT1P11-201ENST00000458482 498 ntBASIC15.63■□□□□ 0.09
ATG4AQ8WYN0 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC15.63■□□□□ 0.09
ATG4AQ8WYN0 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC15.63■□□□□ 0.09
ATG4AQ8WYN0 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC15.63■□□□□ 0.09
ATG4AQ8WYN0 AL390955.2-201ENST00000603032 514 ntBASIC15.63■□□□□ 0.09
ATG4AQ8WYN0 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC15.63■□□□□ 0.09
ATG4AQ8WYN0 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC15.63■□□□□ 0.09
ATG4AQ8WYN0 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
ATG4AQ8WYN0 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC15.63■□□□□ 0.09
ATG4AQ8WYN0 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC15.63■□□□□ 0.09
ATG4AQ8WYN0 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC15.63■□□□□ 0.09
ATG4AQ8WYN0 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC15.63■□□□□ 0.09
ATG4AQ8WYN0 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC15.63■□□□□ 0.09
ATG4AQ8WYN0 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC15.63■□□□□ 0.09
ATG4AQ8WYN0 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
ATG4AQ8WYN0 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC15.63■□□□□ 0.09
ATG4AQ8WYN0 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC15.63■□□□□ 0.09
ATG4AQ8WYN0 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
ATG4AQ8WYN0 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
ATG4AQ8WYN0 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
ATG4AQ8WYN0 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC15.63■□□□□ 0.09
ATG4AQ8WYN0 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
ATG4AQ8WYN0 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC15.63■□□□□ 0.09
ATG4AQ8WYN0 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC15.63■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms