Protein–RNA interactions for Protein: Q8IUD6

RNF135, E3 ubiquitin-protein ligase RNF135, humanhuman

Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF135Q8IUD6 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC16.02■□□□□ 0.15
RNF135Q8IUD6 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
RNF135Q8IUD6 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
RNF135Q8IUD6 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC16.01■□□□□ 0.15
RNF135Q8IUD6 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
RNF135Q8IUD6 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
RNF135Q8IUD6 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC16.01■□□□□ 0.15
RNF135Q8IUD6 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
RNF135Q8IUD6 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
RNF135Q8IUD6 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
RNF135Q8IUD6 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC16.01■□□□□ 0.15
RNF135Q8IUD6 AC009090.5-201ENST00000624886 2285 ntBASIC16.01■□□□□ 0.15
RNF135Q8IUD6 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC16.01■□□□□ 0.15
RNF135Q8IUD6 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
RNF135Q8IUD6 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
RNF135Q8IUD6 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
RNF135Q8IUD6 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
RNF135Q8IUD6 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
RNF135Q8IUD6 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC16.01■□□□□ 0.15
RNF135Q8IUD6 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC16.01■□□□□ 0.15
RNF135Q8IUD6 AC022217.1-201ENST00000521069 738 ntBASIC16.01■□□□□ 0.15
RNF135Q8IUD6 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
RNF135Q8IUD6 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
RNF135Q8IUD6 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC16.01■□□□□ 0.15
RNF135Q8IUD6 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
RNF135Q8IUD6 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC16.01■□□□□ 0.15
RNF135Q8IUD6 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
RNF135Q8IUD6 RN7SL48P-201ENST00000579283 293 ntBASIC16.01■□□□□ 0.15
RNF135Q8IUD6 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
RNF135Q8IUD6 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC16.01■□□□□ 0.15
RNF135Q8IUD6 BX539320.1-201ENST00000623759 877 ntBASIC16.01■□□□□ 0.15
RNF135Q8IUD6 LINC02536-201ENST00000625799 625 ntTSL 3 BASIC16.01■□□□□ 0.15
RNF135Q8IUD6 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
RNF135Q8IUD6 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC16.01■□□□□ 0.15
RNF135Q8IUD6 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
RNF135Q8IUD6 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
RNF135Q8IUD6 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
RNF135Q8IUD6 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC16.01■□□□□ 0.15
RNF135Q8IUD6 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC16.01■□□□□ 0.15
RNF135Q8IUD6 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC16.01■□□□□ 0.15
RNF135Q8IUD6 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
RNF135Q8IUD6 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
RNF135Q8IUD6 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC16.01■□□□□ 0.15
RNF135Q8IUD6 AMT-233ENST00000636522 1620 ntTSL 2 BASIC16.01■□□□□ 0.15
RNF135Q8IUD6 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
RNF135Q8IUD6 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
RNF135Q8IUD6 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
RNF135Q8IUD6 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC16■□□□□ 0.15
RNF135Q8IUD6 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
RNF135Q8IUD6 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
RNF135Q8IUD6 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
RNF135Q8IUD6 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC16■□□□□ 0.15
RNF135Q8IUD6 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC16■□□□□ 0.15
RNF135Q8IUD6 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC16■□□□□ 0.15
RNF135Q8IUD6 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
RNF135Q8IUD6 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC16■□□□□ 0.15
RNF135Q8IUD6 AL138799.1-201ENST00000448213 1675 ntBASIC16■□□□□ 0.15
RNF135Q8IUD6 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
RNF135Q8IUD6 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
RNF135Q8IUD6 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
RNF135Q8IUD6 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC16■□□□□ 0.15
RNF135Q8IUD6 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC16■□□□□ 0.15
RNF135Q8IUD6 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC16■□□□□ 0.15
RNF135Q8IUD6 RAC2-202ENST00000401529 569 ntTSL 4 BASIC16■□□□□ 0.15
RNF135Q8IUD6 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC16■□□□□ 0.15
RNF135Q8IUD6 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC16■□□□□ 0.15
RNF135Q8IUD6 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC16■□□□□ 0.15
RNF135Q8IUD6 AC012618.1-201ENST00000461223 412 ntBASIC16■□□□□ 0.15
RNF135Q8IUD6 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC16■□□□□ 0.15
RNF135Q8IUD6 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC16■□□□□ 0.15
RNF135Q8IUD6 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC16■□□□□ 0.15
RNF135Q8IUD6 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC16■□□□□ 0.15
RNF135Q8IUD6 AL645939.5-201ENST00000606834 243 ntBASIC16■□□□□ 0.15
RNF135Q8IUD6 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC16■□□□□ 0.15
RNF135Q8IUD6 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC16■□□□□ 0.15
RNF135Q8IUD6 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
RNF135Q8IUD6 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
RNF135Q8IUD6 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC16■□□□□ 0.15
RNF135Q8IUD6 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
RNF135Q8IUD6 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
RNF135Q8IUD6 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC16■□□□□ 0.15
RNF135Q8IUD6 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC16■□□□□ 0.15
RNF135Q8IUD6 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC16■□□□□ 0.15
RNF135Q8IUD6 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
RNF135Q8IUD6 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
RNF135Q8IUD6 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC16■□□□□ 0.15
RNF135Q8IUD6 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC16■□□□□ 0.15
RNF135Q8IUD6 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
RNF135Q8IUD6 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC16■□□□□ 0.15
RNF135Q8IUD6 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC16■□□□□ 0.15
RNF135Q8IUD6 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
RNF135Q8IUD6 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC16■□□□□ 0.15
RNF135Q8IUD6 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC16■□□□□ 0.15
RNF135Q8IUD6 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
RNF135Q8IUD6 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
RNF135Q8IUD6 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
RNF135Q8IUD6 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
RNF135Q8IUD6 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
RNF135Q8IUD6 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
RNF135Q8IUD6 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms