Protein–RNA interactions for Protein: Q06546

GABPA, GA-binding protein alpha chain, humanhuman

Predictions only

Length 454 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GABPAQ06546 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC17.5■□□□□ 0.39
GABPAQ06546 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC17.5■□□□□ 0.39
GABPAQ06546 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
GABPAQ06546 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
GABPAQ06546 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC17.5■□□□□ 0.39
GABPAQ06546 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC17.5■□□□□ 0.39
GABPAQ06546 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC17.5■□□□□ 0.39
GABPAQ06546 AL157407.1-201ENST00000435784 904 ntBASIC17.5■□□□□ 0.39
GABPAQ06546 AC012441.2-201ENST00000444843 739 ntBASIC17.5■□□□□ 0.39
GABPAQ06546 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC17.5■□□□□ 0.39
GABPAQ06546 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC17.5■□□□□ 0.39
GABPAQ06546 OARD1-204ENST00000464633 717 ntTSL 2 BASIC17.5■□□□□ 0.39
GABPAQ06546 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC17.5■□□□□ 0.39
GABPAQ06546 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC17.5■□□□□ 0.39
GABPAQ06546 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC17.5■□□□□ 0.39
GABPAQ06546 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC17.5■□□□□ 0.39
GABPAQ06546 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC17.5■□□□□ 0.39
GABPAQ06546 AL160314.3-201ENST00000556041 767 ntBASIC17.5■□□□□ 0.39
GABPAQ06546 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC17.5■□□□□ 0.39
GABPAQ06546 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC17.5■□□□□ 0.39
GABPAQ06546 PPA1-206ENST00000625364 644 ntTSL 5 BASIC17.5■□□□□ 0.39
GABPAQ06546 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC17.5■□□□□ 0.39
GABPAQ06546 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC17.5■□□□□ 0.39
GABPAQ06546 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
GABPAQ06546 FAM90A7P-201ENST00000382628 1395 ntBASIC17.5■□□□□ 0.39
GABPAQ06546 FAM90A23P-201ENST00000400136 1395 ntBASIC17.5■□□□□ 0.39
GABPAQ06546 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
GABPAQ06546 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
GABPAQ06546 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
GABPAQ06546 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
GABPAQ06546 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
GABPAQ06546 API5-203ENST00000455725 2257 ntTSL 2 BASIC17.5■□□□□ 0.39
GABPAQ06546 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC17.5■□□□□ 0.39
GABPAQ06546 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC17.5■□□□□ 0.39
GABPAQ06546 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC17.5■□□□□ 0.39
GABPAQ06546 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
GABPAQ06546 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
GABPAQ06546 ABR-203ENST00000536794 2213 ntTSL 2 BASIC17.49■□□□□ 0.39
GABPAQ06546 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
GABPAQ06546 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
GABPAQ06546 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
GABPAQ06546 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
GABPAQ06546 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
GABPAQ06546 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
GABPAQ06546 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
GABPAQ06546 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
GABPAQ06546 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
GABPAQ06546 MBLAC2-202ENST00000514906 1936 ntBASIC17.49■□□□□ 0.39
GABPAQ06546 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
GABPAQ06546 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
GABPAQ06546 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC17.49■□□□□ 0.39
GABPAQ06546 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
GABPAQ06546 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC17.49■□□□□ 0.39
GABPAQ06546 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
GABPAQ06546 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
GABPAQ06546 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
GABPAQ06546 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
GABPAQ06546 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
GABPAQ06546 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
GABPAQ06546 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
GABPAQ06546 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
GABPAQ06546 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
GABPAQ06546 AL008707.1-201ENST00000422498 534 ntBASIC17.49■□□□□ 0.39
GABPAQ06546 SKA2-202ENST00000437036 625 ntTSL 2 BASIC17.49■□□□□ 0.39
GABPAQ06546 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC17.49■□□□□ 0.39
GABPAQ06546 AL645933.1-201ENST00000440087 609 ntBASIC17.49■□□□□ 0.39
GABPAQ06546 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
GABPAQ06546 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC17.49■□□□□ 0.39
GABPAQ06546 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC17.49■□□□□ 0.39
GABPAQ06546 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
GABPAQ06546 RHOQP1-201ENST00000555758 579 ntBASIC17.49■□□□□ 0.39
GABPAQ06546 SYT17-208ENST00000568433 812 ntTSL 3 BASIC17.49■□□□□ 0.39
GABPAQ06546 MIR6720-201ENST00000611664 98 ntBASIC17.49■□□□□ 0.39
GABPAQ06546 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
GABPAQ06546 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC17.49■□□□□ 0.39
GABPAQ06546 AC027601.3-201ENST00000622907 509 ntBASIC17.49■□□□□ 0.39
GABPAQ06546 AC068587.10-201ENST00000641210 219 ntBASIC17.49■□□□□ 0.39
GABPAQ06546 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
GABPAQ06546 HYMAI-201ENST00000635591 3347 ntBASIC17.49■□□□□ 0.39
GABPAQ06546 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC17.49■□□□□ 0.39
GABPAQ06546 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC17.49■□□□□ 0.39
GABPAQ06546 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC17.49■□□□□ 0.39
GABPAQ06546 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
GABPAQ06546 SF1-209ENST00000433274 2317 ntTSL 2 BASIC17.49■□□□□ 0.39
GABPAQ06546 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
GABPAQ06546 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
GABPAQ06546 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
GABPAQ06546 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC17.49■□□□□ 0.39
GABPAQ06546 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
GABPAQ06546 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
GABPAQ06546 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
GABPAQ06546 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
GABPAQ06546 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
GABPAQ06546 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
GABPAQ06546 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
GABPAQ06546 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
GABPAQ06546 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
GABPAQ06546 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
GABPAQ06546 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
GABPAQ06546 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms