Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC10.45□□□□□ -0.74
PRKDCP78527 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
PRKDCP78527 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
PRKDCP78527 AC106785.2-201ENST00000564385 1319 ntBASIC10.45□□□□□ -0.74
PRKDCP78527 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
PRKDCP78527 AP000845.1-201ENST00000581677 2131 ntBASIC10.45□□□□□ -0.74
PRKDCP78527 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC10.45□□□□□ -0.74
PRKDCP78527 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC10.45□□□□□ -0.74
PRKDCP78527 LCE4A-201ENST00000335535 388 ntAPPRIS P1 BASIC10.45□□□□□ -0.74
PRKDCP78527 GLRX2-202ENST00000367440 1131 ntAPPRIS P4 TSL 1 (best) BASIC10.45□□□□□ -0.74
PRKDCP78527 AC073869.2-201ENST00000417338 1026 ntBASIC10.45□□□□□ -0.74
PRKDCP78527 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC10.45□□□□□ -0.74
PRKDCP78527 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC10.45□□□□□ -0.74
PRKDCP78527 AC092327.2-201ENST00000595705 901 ntTSL 3 BASIC10.45□□□□□ -0.74
PRKDCP78527 AC016586.1-201ENST00000600056 684 ntTSL 3 BASIC10.45□□□□□ -0.74
PRKDCP78527 PLA2G4C-AS1-203ENST00000601950 454 ntTSL 3 BASIC10.45□□□□□ -0.74
PRKDCP78527 AC113385.2-201ENST00000614465 762 ntBASIC10.45□□□□□ -0.74
PRKDCP78527 PAX6-237ENST00000638696 1203 ntTSL 5 BASIC10.45□□□□□ -0.74
PRKDCP78527 PAX6-238ENST00000638755 1161 ntTSL 5 BASIC10.45□□□□□ -0.74
PRKDCP78527 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC10.45□□□□□ -0.74
PRKDCP78527 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC10.45□□□□□ -0.74
PRKDCP78527 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC10.45□□□□□ -0.74
PRKDCP78527 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC10.45□□□□□ -0.74
PRKDCP78527 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC10.45□□□□□ -0.74
PRKDCP78527 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC10.44□□□□□ -0.74
PRKDCP78527 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC10.44□□□□□ -0.74
PRKDCP78527 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
PRKDCP78527 MIR611-201ENST00000384869 67 ntBASIC10.44□□□□□ -0.74
PRKDCP78527 SIX3-AS1-201ENST00000419364 844 ntTSL 2 BASIC10.44□□□□□ -0.74
PRKDCP78527 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC10.44□□□□□ -0.74
PRKDCP78527 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC10.44□□□□□ -0.74
PRKDCP78527 MKRN3-202ENST00000564592 629 ntTSL 3 BASIC10.44□□□□□ -0.74
PRKDCP78527 AC092720.1-202ENST00000565824 555 ntTSL 4 BASIC10.44□□□□□ -0.74
PRKDCP78527 NT5C-204ENST00000578337 582 ntTSL 2 BASIC10.44□□□□□ -0.74
PRKDCP78527 GAS7-216ENST00000583882 553 ntTSL 5 BASIC10.44□□□□□ -0.74
PRKDCP78527 RPAIN-202ENST00000381208 1394 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
PRKDCP78527 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC10.44□□□□□ -0.74
PRKDCP78527 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
PRKDCP78527 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
PRKDCP78527 DAP3-201ENST00000343043 1649 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
PRKDCP78527 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC10.44□□□□□ -0.74
PRKDCP78527 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC10.44□□□□□ -0.74
PRKDCP78527 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
PRKDCP78527 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC10.44□□□□□ -0.74
PRKDCP78527 LYRM1-202ENST00000396052 1659 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
PRKDCP78527 AC091729.3-203ENST00000413706 674 ntTSL 5 BASIC10.44□□□□□ -0.74
PRKDCP78527 PSAT1P2-201ENST00000426107 972 ntBASIC10.44□□□□□ -0.74
PRKDCP78527 CYP4F29P-202ENST00000428301 1279 ntTSL 2 BASIC10.44□□□□□ -0.74
PRKDCP78527 AC087442.1-201ENST00000525563 249 ntTSL 2 BASIC10.44□□□□□ -0.74
PRKDCP78527 AP003031.2-205ENST00000531263 683 ntTSL 2 BASIC10.44□□□□□ -0.74
PRKDCP78527 C11orf97-201ENST00000542198 701 ntAPPRIS P1 TSL 5 BASIC10.44□□□□□ -0.74
PRKDCP78527 AC012617.1-202ENST00000586488 509 ntTSL 2 BASIC10.44□□□□□ -0.74
PRKDCP78527 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC10.44□□□□□ -0.74
PRKDCP78527 Metazoa_SRP.200-201ENST00000622073 282 ntBASIC10.44□□□□□ -0.74
PRKDCP78527 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC10.44□□□□□ -0.74
PRKDCP78527 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
PRKDCP78527 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC10.44□□□□□ -0.74
PRKDCP78527 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC10.44□□□□□ -0.74
PRKDCP78527 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC10.44□□□□□ -0.74
PRKDCP78527 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
PRKDCP78527 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
PRKDCP78527 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC10.44□□□□□ -0.74
PRKDCP78527 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC10.44□□□□□ -0.74
PRKDCP78527 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
PRKDCP78527 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC10.44□□□□□ -0.74
PRKDCP78527 NAT8B-201ENST00000377712 765 ntAPPRIS P1 BASIC10.44□□□□□ -0.74
PRKDCP78527 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC10.44□□□□□ -0.74
PRKDCP78527 SUMO1-202ENST00000392245 1071 ntAPPRIS P1 TSL 3 BASIC10.44□□□□□ -0.74
PRKDCP78527 AP000354.1-201ENST00000396982 456 ntBASIC10.44□□□□□ -0.74
PRKDCP78527 DNM1P48-201ENST00000419538 439 ntBASIC10.44□□□□□ -0.74
PRKDCP78527 FRGCA-201ENST00000424933 422 ntTSL 3 BASIC10.44□□□□□ -0.74
PRKDCP78527 HNF1A-AS1-201ENST00000433033 612 ntTSL 3 BASIC10.44□□□□□ -0.74
PRKDCP78527 SNHG4-204ENST00000507197 865 ntTSL 2 BASIC10.44□□□□□ -0.74
PRKDCP78527 AC008750.2-201ENST00000526996 627 ntTSL 3 BASIC10.44□□□□□ -0.74
PRKDCP78527 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC10.44□□□□□ -0.74
PRKDCP78527 AC105133.1-201ENST00000559749 742 ntTSL 3 BASIC10.44□□□□□ -0.74
PRKDCP78527 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC10.44□□□□□ -0.74
PRKDCP78527 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
PRKDCP78527 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC10.44□□□□□ -0.74
PRKDCP78527 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC10.44□□□□□ -0.74
PRKDCP78527 CEP83-AS1-201ENST00000623122 2482 ntBASIC10.44□□□□□ -0.74
PRKDCP78527 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC10.44□□□□□ -0.74
PRKDCP78527 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC10.44□□□□□ -0.74
PRKDCP78527 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC10.44□□□□□ -0.74
PRKDCP78527 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC10.44□□□□□ -0.74
PRKDCP78527 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
PRKDCP78527 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC10.44□□□□□ -0.74
PRKDCP78527 CYB5R2-201ENST00000299498 1254 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
PRKDCP78527 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC10.43□□□□□ -0.74
PRKDCP78527 RIC3-205ENST00000425599 867 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
PRKDCP78527 TTTY18-201ENST00000438677 221 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
PRKDCP78527 KCNC4-AS1-201ENST00000455967 748 ntTSL 2 BASIC10.43□□□□□ -0.74
PRKDCP78527 CR383656.13-201ENST00000550928 563 ntTSL 3 BASIC10.43□□□□□ -0.74
PRKDCP78527 AL512310.10-201ENST00000555580 563 ntTSL 3 BASIC10.43□□□□□ -0.74
PRKDCP78527 SIGLEC22P-201ENST00000599104 714 ntBASIC10.43□□□□□ -0.74
PRKDCP78527 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC10.43□□□□□ -0.74
PRKDCP78527 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
PRKDCP78527 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
PRKDCP78527 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
PRKDCP78527 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC10.43□□□□□ -0.74
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms