Protein–RNA interactions for Protein: P43681

CHRNA4, Neuronal acetylcholine receptor subunit alpha-4, humanhuman

Predictions only

Length 627 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4P43681 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CHRNA4P43681 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC15.2■□□□□ 0.02
CHRNA4P43681 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
CHRNA4P43681 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
CHRNA4P43681 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC15.2■□□□□ 0.02
CHRNA4P43681 COX5BP8-201ENST00000416911 349 ntBASIC15.2■□□□□ 0.02
CHRNA4P43681 RPL28-203ENST00000428193 573 ntTSL 2 BASIC15.2■□□□□ 0.02
CHRNA4P43681 RPL28-204ENST00000431533 590 ntTSL 2 BASIC15.2■□□□□ 0.02
CHRNA4P43681 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC15.2■□□□□ 0.02
CHRNA4P43681 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC15.2■□□□□ 0.02
CHRNA4P43681 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC15.2■□□□□ 0.02
CHRNA4P43681 AC011495.1-201ENST00000498085 584 ntBASIC15.2■□□□□ 0.02
CHRNA4P43681 AP001889.1-201ENST00000525414 633 ntBASIC15.2■□□□□ 0.02
CHRNA4P43681 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CHRNA4P43681 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
CHRNA4P43681 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
CHRNA4P43681 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC15.2■□□□□ 0.02
CHRNA4P43681 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
CHRNA4P43681 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
CHRNA4P43681 RPL28-207ENST00000558815 616 ntTSL 2 BASIC15.2■□□□□ 0.02
CHRNA4P43681 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC15.2■□□□□ 0.02
CHRNA4P43681 AC105233.6-201ENST00000642093 218 ntBASIC15.2■□□□□ 0.02
CHRNA4P43681 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CHRNA4P43681 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
CHRNA4P43681 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CHRNA4P43681 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CHRNA4P43681 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CHRNA4P43681 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
CHRNA4P43681 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC15.2■□□□□ 0.02
CHRNA4P43681 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC15.2■□□□□ 0.02
CHRNA4P43681 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CHRNA4P43681 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CHRNA4P43681 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CHRNA4P43681 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CHRNA4P43681 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CHRNA4P43681 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CHRNA4P43681 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CHRNA4P43681 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CHRNA4P43681 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CHRNA4P43681 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CHRNA4P43681 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC15.19■□□□□ 0.02
CHRNA4P43681 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CHRNA4P43681 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CHRNA4P43681 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
CHRNA4P43681 FAM45BP-202ENST00000592932 1624 ntBASIC15.19■□□□□ 0.02
CHRNA4P43681 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC15.19■□□□□ 0.02
CHRNA4P43681 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC15.19■□□□□ 0.02
CHRNA4P43681 AL512384.1-201ENST00000406683 331 ntBASIC15.19■□□□□ 0.02
CHRNA4P43681 GSAP-205ENST00000430584 600 ntTSL 5 BASIC15.19■□□□□ 0.02
CHRNA4P43681 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
CHRNA4P43681 AC007389.4-201ENST00000454674 793 ntBASIC15.19■□□□□ 0.02
CHRNA4P43681 FO681548.1-201ENST00000455617 1132 ntBASIC15.19■□□□□ 0.02
CHRNA4P43681 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
CHRNA4P43681 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC15.19■□□□□ 0.02
CHRNA4P43681 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
CHRNA4P43681 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
CHRNA4P43681 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CHRNA4P43681 AC008735.3-201ENST00000596646 500 ntBASIC15.19■□□□□ 0.02
CHRNA4P43681 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC15.19■□□□□ 0.02
CHRNA4P43681 CECR7-204ENST00000609932 568 ntTSL 2 BASIC15.19■□□□□ 0.02
CHRNA4P43681 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC15.19■□□□□ 0.02
CHRNA4P43681 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC15.19■□□□□ 0.02
CHRNA4P43681 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CHRNA4P43681 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC15.19■□□□□ 0.02
CHRNA4P43681 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
CHRNA4P43681 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CHRNA4P43681 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC15.19■□□□□ 0.02
CHRNA4P43681 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
CHRNA4P43681 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CHRNA4P43681 AL138709.1-201ENST00000614840 1693 ntBASIC15.19■□□□□ 0.02
CHRNA4P43681 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
CHRNA4P43681 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC15.19■□□□□ 0.02
CHRNA4P43681 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC15.18■□□□□ 0.02
CHRNA4P43681 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
CHRNA4P43681 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC15.18■□□□□ 0.02
CHRNA4P43681 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
CHRNA4P43681 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC15.18■□□□□ 0.02
CHRNA4P43681 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CHRNA4P43681 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CHRNA4P43681 AP001267.2-201ENST00000532619 2086 ntBASIC15.18■□□□□ 0.02
CHRNA4P43681 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
CHRNA4P43681 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CHRNA4P43681 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CHRNA4P43681 MYO15B-237ENST00000642007 4893 ntBASIC15.18■□□□□ 0.02
CHRNA4P43681 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CHRNA4P43681 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
CHRNA4P43681 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC15.18■□□□□ 0.02
CHRNA4P43681 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC15.18■□□□□ 0.02
CHRNA4P43681 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC15.18■□□□□ 0.02
CHRNA4P43681 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC15.18■□□□□ 0.02
CHRNA4P43681 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CHRNA4P43681 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CHRNA4P43681 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC15.18■□□□□ 0.02
CHRNA4P43681 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
CHRNA4P43681 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CHRNA4P43681 TTTY23B-201ENST00000442790 549 ntBASIC15.18■□□□□ 0.02
CHRNA4P43681 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC15.18■□□□□ 0.02
CHRNA4P43681 COX20P2-201ENST00000452636 358 ntBASIC15.18■□□□□ 0.02
CHRNA4P43681 USP32P1-208ENST00000506594 1164 ntBASIC15.18■□□□□ 0.02
CHRNA4P43681 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms